Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FST-202ENST00000396947 2538 ntTSL 5 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 GNAS-203ENST00000306120 1878 ntBASIC13.87□□□□□ -0.19
HLA-DMBP28068 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 PRR31-201ENST00000371629 978 ntTSL 2 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 MIR1238-201ENST00000408483 83 ntBASIC13.86□□□□□ -0.19
HLA-DMBP28068 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 AC106820.2-201ENST00000563775 3264 ntBASIC13.86□□□□□ -0.19
HLA-DMBP28068 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 SDHAP2-201ENST00000455183 2001 ntBASIC13.86□□□□□ -0.19
HLA-DMBP28068 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
HLA-DMBP28068 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HLA-DMBP28068 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 AC012313.1-201ENST00000593393 3059 ntBASIC13.85□□□□□ -0.19
HLA-DMBP28068 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HLA-DMBP28068 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC13.85□□□□□ -0.19
HLA-DMBP28068 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 AC012317.2-201ENST00000623305 2251 ntBASIC13.84□□□□□ -0.19
HLA-DMBP28068 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms