Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGA1P17096 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGA1P17096 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGA1P17096 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGA1P17096 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HMGA1P17096 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGA1P17096 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGA1P17096 RBM17P3-201ENST00000417687 1192 ntBASIC18.77■□□□□ 0.6
HMGA1P17096 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.77■□□□□ 0.6
HMGA1P17096 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
HMGA1P17096 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HMGA1P17096 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
HMGA1P17096 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.77■□□□□ 0.6
HMGA1P17096 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.77■□□□□ 0.6
HMGA1P17096 AC148477.8-201ENST00000624298 468 ntBASIC18.77■□□□□ 0.6
HMGA1P17096 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.77■□□□□ 0.6
HMGA1P17096 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGA1P17096 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 WIZP1-201ENST00000531444 2299 ntBASIC18.77■□□□□ 0.6
HMGA1P17096 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGA1P17096 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HMGA1P17096 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HMGA1P17096 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HMGA1P17096 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
HMGA1P17096 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.77■□□□□ 0.59
HMGA1P17096 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
HMGA1P17096 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HMGA1P17096 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGA1P17096 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGA1P17096 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGA1P17096 AC079776.4-201ENST00000511039 504 ntBASIC18.76■□□□□ 0.59
HMGA1P17096 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGA1P17096 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.76■□□□□ 0.59
HMGA1P17096 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.76■□□□□ 0.59
HMGA1P17096 MTDHP3-201ENST00000594186 672 ntBASIC18.76■□□□□ 0.59
HMGA1P17096 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGA1P17096 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
HMGA1P17096 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGA1P17096 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.76■□□□□ 0.59
HMGA1P17096 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGA1P17096 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HMGA1P17096 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HMGA1P17096 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 AC097374.2-201ENST00000618617 1306 ntBASIC18.75■□□□□ 0.59
HMGA1P17096 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 AC093503.3-201ENST00000624917 2352 ntBASIC18.75■□□□□ 0.59
HMGA1P17096 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGA1P17096 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 KRT18P67-201ENST00000432816 1264 ntBASIC18.75■□□□□ 0.59
HMGA1P17096 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGA1P17096 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGA1P17096 AC064862.7-201ENST00000604520 867 ntBASIC18.75■□□□□ 0.59
HMGA1P17096 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGA1P17096 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGA1P17096 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HMGA1P17096 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGA1P17096 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGA1P17096 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HMGA1P17096 AP005117.1-201ENST00000584346 1413 ntBASIC18.74■□□□□ 0.59
HMGA1P17096 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
HMGA1P17096 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGA1P17096 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGA1P17096 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms