Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.95□□□□□ -0.34
COL7A1Q02388 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC12.95□□□□□ -0.34
COL7A1Q02388 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.95□□□□□ -0.34
COL7A1Q02388 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 AC148477.5-201ENST00000625164 1645 ntBASIC12.95□□□□□ -0.34
COL7A1Q02388 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL7A1Q02388 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.95□□□□□ -0.34
COL7A1Q02388 AC007967.3-201ENST00000434308 558 ntBASIC12.95□□□□□ -0.34
COL7A1Q02388 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.95□□□□□ -0.34
COL7A1Q02388 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC12.95□□□□□ -0.34
COL7A1Q02388 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC12.95□□□□□ -0.34
COL7A1Q02388 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
COL7A1Q02388 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 AC007952.6-201ENST00000573168 2673 ntBASIC12.94□□□□□ -0.34
COL7A1Q02388 AC003957.1-201ENST00000625108 2673 ntBASIC12.94□□□□□ -0.34
COL7A1Q02388 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
COL7A1Q02388 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC12.94□□□□□ -0.34
COL7A1Q02388 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC12.94□□□□□ -0.34
COL7A1Q02388 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC12.94□□□□□ -0.34
COL7A1Q02388 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC12.94□□□□□ -0.34
COL7A1Q02388 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.94□□□□□ -0.34
COL7A1Q02388 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC12.94□□□□□ -0.34
COL7A1Q02388 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
COL7A1Q02388 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC12.94□□□□□ -0.34
COL7A1Q02388 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 MEIS3P1-201ENST00000495167 958 ntBASIC12.94□□□□□ -0.34
COL7A1Q02388 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 KRT19P2-202ENST00000557173 1012 ntBASIC12.94□□□□□ -0.34
COL7A1Q02388 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 AP000867.4-201ENST00000641616 219 ntBASIC12.94□□□□□ -0.34
COL7A1Q02388 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC12.94□□□□□ -0.34
COL7A1Q02388 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
COL7A1Q02388 UROS-202ENST00000368778 1556 ntTSL 2 BASIC12.94□□□□□ -0.34
COL7A1Q02388 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC12.94□□□□□ -0.34
COL7A1Q02388 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
COL7A1Q02388 SDHAP2-201ENST00000455183 2001 ntBASIC12.94□□□□□ -0.34
COL7A1Q02388 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
COL7A1Q02388 LINC00602-201ENST00000629776 2065 ntBASIC12.93□□□□□ -0.34
COL7A1Q02388 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
COL7A1Q02388 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
COL7A1Q02388 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC12.93□□□□□ -0.34
COL7A1Q02388 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.93□□□□□ -0.34
COL7A1Q02388 METTL26-205ENST00000397666 726 ntTSL 2 BASIC12.93□□□□□ -0.34
COL7A1Q02388 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.93□□□□□ -0.34
COL7A1Q02388 AC112698.1-201ENST00000510299 916 ntBASIC12.93□□□□□ -0.34
COL7A1Q02388 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC12.93□□□□□ -0.34
COL7A1Q02388 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC12.93□□□□□ -0.34
COL7A1Q02388 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC12.93□□□□□ -0.34
COL7A1Q02388 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
COL7A1Q02388 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC12.93□□□□□ -0.34
COL7A1Q02388 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
COL7A1Q02388 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 AFG3L1P-217ENST00000557444 2447 ntBASIC12.93□□□□□ -0.34
COL7A1Q02388 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 AC063926.2-201ENST00000623766 1308 ntBASIC12.93□□□□□ -0.34
COL7A1Q02388 ASL-204ENST00000395331 1538 ntTSL 5 BASIC12.93□□□□□ -0.34
COL7A1Q02388 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
COL7A1Q02388 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.92□□□□□ -0.34
COL7A1Q02388 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
COL7A1Q02388 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL7A1Q02388 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC12.92□□□□□ -0.34
COL7A1Q02388 AC022145.2-201ENST00000598203 171 ntBASIC12.92□□□□□ -0.34
COL7A1Q02388 AC092902.6-201ENST00000641783 218 ntBASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms