Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
CUX1P39880 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX1P39880 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
CUX1P39880 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX1P39880 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC30.31■■■□□ 2.44
CUX1P39880 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX1P39880 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC30.31■■■□□ 2.44
CUX1P39880 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
CUX1P39880 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC30.31■■■□□ 2.44
CUX1P39880 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
CUX1P39880 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC30.31■■■□□ 2.44
CUX1P39880 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC30.31■■■□□ 2.44
CUX1P39880 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC30.31■■■□□ 2.44
CUX1P39880 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CUX1P39880 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX1P39880 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX1P39880 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX1P39880 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX1P39880 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX1P39880 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC30.3■■■□□ 2.44
CUX1P39880 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC30.3■■■□□ 2.44
CUX1P39880 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC30.3■■■□□ 2.44
CUX1P39880 AC122714.2-201ENST00000502787 707 ntBASIC30.3■■■□□ 2.44
CUX1P39880 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
CUX1P39880 AC002310.6-201ENST00000624451 1377 ntBASIC30.3■■■□□ 2.44
CUX1P39880 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CUX1P39880 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC30.29■■■□□ 2.44
CUX1P39880 AC004817.3-201ENST00000602957 2129 ntBASIC30.29■■■□□ 2.44
CUX1P39880 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC30.29■■■□□ 2.44
CUX1P39880 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
CUX1P39880 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 AC211486.1-202ENST00000416371 468 ntBASIC30.29■■■□□ 2.44
CUX1P39880 AC211476.1-201ENST00000503899 468 ntBASIC30.29■■■□□ 2.44
CUX1P39880 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 RFPL4AP1-201ENST00000530883 850 ntBASIC30.29■■■□□ 2.44
CUX1P39880 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC30.29■■■□□ 2.44
CUX1P39880 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC30.29■■■□□ 2.44
CUX1P39880 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC30.29■■■□□ 2.44
CUX1P39880 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC30.29■■■□□ 2.44
CUX1P39880 MTDHP5-201ENST00000598980 586 ntBASIC30.29■■■□□ 2.44
CUX1P39880 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 AC097374.2-201ENST00000618617 1306 ntBASIC30.29■■■□□ 2.44
CUX1P39880 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC30.29■■■□□ 2.44
CUX1P39880 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC30.29■■■□□ 2.44
CUX1P39880 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC30.29■■■□□ 2.44
CUX1P39880 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC30.29■■■□□ 2.44
CUX1P39880 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CUX1P39880 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
CUX1P39880 AFG3L1P-217ENST00000557444 2447 ntBASIC30.28■■■□□ 2.44
CUX1P39880 CD9-202ENST00000382515 1229 ntTSL 5 BASIC30.28■■■□□ 2.44
CUX1P39880 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC30.28■■■□□ 2.44
CUX1P39880 CIPC-205ENST00000555437 566 ntTSL 3 BASIC30.28■■■□□ 2.44
CUX1P39880 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CUX1P39880 MIR1199-201ENST00000621445 119 ntBASIC30.28■■■□□ 2.44
CUX1P39880 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
CUX1P39880 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CUX1P39880 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CUX1P39880 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
CUX1P39880 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC30.27■■■□□ 2.44
CUX1P39880 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
CUX1P39880 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC30.27■■■□□ 2.44
CUX1P39880 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC30.27■■■□□ 2.44
CUX1P39880 AC148477.5-201ENST00000625164 1645 ntBASIC30.27■■■□□ 2.44
CUX1P39880 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
CUX1P39880 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
CUX1P39880 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
CUX1P39880 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
CUX1P39880 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
CUX1P39880 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
CUX1P39880 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC30.27■■■□□ 2.44
CUX1P39880 AC108073.2-201ENST00000464002 357 ntBASIC30.27■■■□□ 2.44
CUX1P39880 CYMP-203ENST00000474680 1263 ntBASIC30.27■■■□□ 2.44
CUX1P39880 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CUX1P39880 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms