Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.44■□□□□ 0.86
CHMP2AO43633 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.44■□□□□ 0.86
CHMP2AO43633 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
CHMP2AO43633 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP2AO43633 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP2AO43633 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CHMP2AO43633 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CHMP2AO43633 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CHMP2AO43633 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 ATP5G2P1-201ENST00000433580 426 ntBASIC20.43■□□□□ 0.86
CHMP2AO43633 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.43■□□□□ 0.86
CHMP2AO43633 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.43■□□□□ 0.86
CHMP2AO43633 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.43■□□□□ 0.86
CHMP2AO43633 IGHV3-41-201ENST00000613121 348 ntBASIC20.43■□□□□ 0.86
CHMP2AO43633 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
CHMP2AO43633 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP2AO43633 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP2AO43633 AC090164.3-201ENST00000610780 2143 ntBASIC20.42■□□□□ 0.86
CHMP2AO43633 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CHMP2AO43633 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
CHMP2AO43633 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 KRT18P56-201ENST00000507275 550 ntBASIC20.42■□□□□ 0.86
CHMP2AO43633 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.42■□□□□ 0.86
CHMP2AO43633 AC008687.5-201ENST00000593746 558 ntBASIC20.42■□□□□ 0.86
CHMP2AO43633 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CHMP2AO43633 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
CHMP2AO43633 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
CHMP2AO43633 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP2AO43633 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP2AO43633 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP2AO43633 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CHMP2AO43633 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP2AO43633 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.41■□□□□ 0.86
CHMP2AO43633 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.41■□□□□ 0.86
CHMP2AO43633 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CHMP2AO43633 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.41■□□□□ 0.86
CHMP2AO43633 MIR3180-1-201ENST00000580374 94 ntBASIC20.41■□□□□ 0.86
CHMP2AO43633 MIR3180-3-201ENST00000584616 94 ntBASIC20.41■□□□□ 0.86
CHMP2AO43633 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP2AO43633 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CHMP2AO43633 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP2AO43633 PHGDH-209ENST00000641074 1780 ntBASIC20.41■□□□□ 0.86
CHMP2AO43633 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP2AO43633 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CHMP2AO43633 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP2AO43633 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
CHMP2AO43633 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP2AO43633 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP2AO43633 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms