Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SGCEO43556 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SGCEO43556 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 AC009102.3-201ENST00000623118 1491 ntBASIC16.1■□□□□ 0.17
SGCEO43556 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SGCEO43556 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SGCEO43556 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 ABALON-201ENST00000629058 1903 ntBASIC16.1■□□□□ 0.17
SGCEO43556 TNRC18P3-201ENST00000441896 2691 ntBASIC16.1■□□□□ 0.17
SGCEO43556 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 MIR149-201ENST00000384879 89 ntBASIC16.1■□□□□ 0.17
SGCEO43556 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
SGCEO43556 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.1■□□□□ 0.17
SGCEO43556 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.1■□□□□ 0.17
SGCEO43556 AC104390.1-201ENST00000555663 520 ntBASIC16.1■□□□□ 0.17
SGCEO43556 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.1■□□□□ 0.17
SGCEO43556 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.1■□□□□ 0.17
SGCEO43556 AC073912.3-201ENST00000624414 853 ntBASIC16.1■□□□□ 0.17
SGCEO43556 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 AC099398.1-201ENST00000567919 2776 ntBASIC16.1■□□□□ 0.17
SGCEO43556 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SGCEO43556 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SGCEO43556 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 AL354751.1-201ENST00000412768 1863 ntBASIC16.1■□□□□ 0.17
SGCEO43556 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.1■□□□□ 0.17
SGCEO43556 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SGCEO43556 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.09■□□□□ 0.17
SGCEO43556 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
SGCEO43556 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.09■□□□□ 0.17
SGCEO43556 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SGCEO43556 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.09■□□□□ 0.17
SGCEO43556 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.09■□□□□ 0.17
SGCEO43556 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.09■□□□□ 0.17
SGCEO43556 AP000523.1-201ENST00000398242 1049 ntBASIC16.09■□□□□ 0.17
SGCEO43556 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.09■□□□□ 0.17
SGCEO43556 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.09■□□□□ 0.17
SGCEO43556 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.09■□□□□ 0.17
SGCEO43556 NEK4P2-201ENST00000580004 1012 ntBASIC16.09■□□□□ 0.17
SGCEO43556 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.09■□□□□ 0.17
SGCEO43556 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.09■□□□□ 0.17
SGCEO43556 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
SGCEO43556 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
SGCEO43556 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.09■□□□□ 0.17
SGCEO43556 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SGCEO43556 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SGCEO43556 GMCL1P1-201ENST00000463439 1581 ntBASIC16.09■□□□□ 0.17
SGCEO43556 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SGCEO43556 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SGCEO43556 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SGCEO43556 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SGCEO43556 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.08■□□□□ 0.17
SGCEO43556 AC135776.1-201ENST00000319817 2481 ntBASIC16.08■□□□□ 0.17
SGCEO43556 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SGCEO43556 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.08■□□□□ 0.17
SGCEO43556 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SGCEO43556 AC099343.3-201ENST00000605834 2503 ntBASIC16.08■□□□□ 0.17
SGCEO43556 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
SGCEO43556 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
SGCEO43556 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SGCEO43556 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.08■□□□□ 0.16
SGCEO43556 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SGCEO43556 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms