Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 AP000974.1-201ENST00000623909 2387 ntBASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 HMGN1P19-201ENST00000436976 333 ntBASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 TP73-AS1-210ENST00000637775 1455 ntBASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMD1Q9UGP4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AC104109.2-201ENST00000602919 1418 ntBASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 RBM17P3-201ENST00000417687 1192 ntBASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AC027601.4-201ENST00000611259 610 ntBASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMD1Q9UGP4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 UPF3AP3-201ENST00000420996 769 ntBASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
LIMD1Q9UGP4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 AC145285.3-201ENST00000564603 959 ntBASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 AL356488.2-201ENST00000602755 427 ntBASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 AL355385.1-201ENST00000606123 409 ntBASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
LIMD1Q9UGP4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms