Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
TRIM56Q9BRZ2 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 AP000997.3-201ENST00000623333 2250 ntBASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 TSPY15P-201ENST00000457163 923 ntBASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 AP001412.1-201ENST00000608405 714 ntBASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 AC034236.2-201ENST00000606662 1610 ntBASIC18.6■□□□□ 0.57
TRIM56Q9BRZ2 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 CA15P1-201ENST00000481698 905 ntBASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 AP003041.3-201ENST00000527151 707 ntBASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 AP005242.2-201ENST00000580065 1175 ntBASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 MIR3180-5-201ENST00000583743 153 ntBASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 AL023803.3-201ENST00000615559 522 ntBASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 AL096828.2-201ENST00000567259 1965 ntBASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM56Q9BRZ2 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 PHGDH-209ENST00000641074 1780 ntBASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TRIM56Q9BRZ2 SDHAP2-201ENST00000455183 2001 ntBASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms