Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.51■□□□□ 0.55
USP39Q53GS9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.5■□□□□ 0.55
USP39Q53GS9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
USP39Q53GS9 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.5■□□□□ 0.55
USP39Q53GS9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.5■□□□□ 0.55
USP39Q53GS9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.5■□□□□ 0.55
USP39Q53GS9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
USP39Q53GS9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 NUS1P2-201ENST00000417358 873 ntBASIC18.5■□□□□ 0.55
USP39Q53GS9 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.5■□□□□ 0.55
USP39Q53GS9 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 AC011840.4-201ENST00000578471 627 ntBASIC18.5■□□□□ 0.55
USP39Q53GS9 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.5■□□□□ 0.55
USP39Q53GS9 REXO1L6P-202ENST00000619970 1078 ntBASIC18.5■□□□□ 0.55
USP39Q53GS9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USP39Q53GS9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.5■□□□□ 0.55
USP39Q53GS9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
USP39Q53GS9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP39Q53GS9 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.49■□□□□ 0.55
USP39Q53GS9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
USP39Q53GS9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
USP39Q53GS9 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 AKR1C7P-201ENST00000305623 895 ntBASIC18.49■□□□□ 0.55
USP39Q53GS9 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.49■□□□□ 0.55
USP39Q53GS9 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.49■□□□□ 0.55
USP39Q53GS9 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.49■□□□□ 0.55
USP39Q53GS9 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.49■□□□□ 0.55
USP39Q53GS9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.49■□□□□ 0.55
USP39Q53GS9 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.49■□□□□ 0.55
USP39Q53GS9 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
USP39Q53GS9 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.49■□□□□ 0.55
USP39Q53GS9 AL353692.3-201ENST00000407031 1396 ntBASIC18.49■□□□□ 0.55
USP39Q53GS9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.49■□□□□ 0.55
USP39Q53GS9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.49■□□□□ 0.55
USP39Q53GS9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
USP39Q53GS9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
USP39Q53GS9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 AL138781.2-201ENST00000617896 1843 ntBASIC18.49■□□□□ 0.55
USP39Q53GS9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 FEM1AP3-201ENST00000403722 1741 ntBASIC18.49■□□□□ 0.55
USP39Q53GS9 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
USP39Q53GS9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USP39Q53GS9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
USP39Q53GS9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
USP39Q53GS9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.48■□□□□ 0.55
USP39Q53GS9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
USP39Q53GS9 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.48■□□□□ 0.55
USP39Q53GS9 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.48■□□□□ 0.55
USP39Q53GS9 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
USP39Q53GS9 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.48■□□□□ 0.55
USP39Q53GS9 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.48■□□□□ 0.55
USP39Q53GS9 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
USP39Q53GS9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.48■□□□□ 0.55
USP39Q53GS9 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
USP39Q53GS9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
USP39Q53GS9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USP39Q53GS9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.48■□□□□ 0.55
USP39Q53GS9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
USP39Q53GS9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP39Q53GS9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP39Q53GS9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP39Q53GS9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms