Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
LMO4P61968 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMO4P61968 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMO4P61968 ESPNP-201ENST00000270691 2015 ntBASIC14.92□□□□□ -0.02
LMO4P61968 CROCCP3-202ENST00000420820 1947 ntBASIC14.92□□□□□ -0.02
LMO4P61968 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMO4P61968 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMO4P61968 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC14.91□□□□□ -0.02
LMO4P61968 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.91□□□□□ -0.02
LMO4P61968 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
LMO4P61968 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.91□□□□□ -0.02
LMO4P61968 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
LMO4P61968 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
LMO4P61968 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC14.91□□□□□ -0.02
LMO4P61968 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.91□□□□□ -0.02
LMO4P61968 IRF8-202ENST00000562492 946 ntTSL 3 BASIC14.91□□□□□ -0.02
LMO4P61968 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.91□□□□□ -0.02
LMO4P61968 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.91□□□□□ -0.02
LMO4P61968 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.91□□□□□ -0.02
LMO4P61968 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.91□□□□□ -0.02
LMO4P61968 AC008608.2-201ENST00000606089 416 ntBASIC14.91□□□□□ -0.02
LMO4P61968 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC14.91□□□□□ -0.02
LMO4P61968 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC14.91□□□□□ -0.02
LMO4P61968 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMO4P61968 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LMO4P61968 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.9□□□□□ -0.02
LMO4P61968 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.9□□□□□ -0.02
LMO4P61968 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.9□□□□□ -0.02
LMO4P61968 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 RNA5SP419-201ENST00000515908 135 ntBASIC14.9□□□□□ -0.02
LMO4P61968 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.9□□□□□ -0.02
LMO4P61968 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.9□□□□□ -0.02
LMO4P61968 AL355877.3-201ENST00000622820 899 ntBASIC14.9□□□□□ -0.02
LMO4P61968 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 AC120498.9-201ENST00000339021 3867 ntBASIC14.9□□□□□ -0.02
LMO4P61968 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.9□□□□□ -0.02
LMO4P61968 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.9□□□□□ -0.02
LMO4P61968 AC132938.6-201ENST00000623828 1655 ntBASIC14.9□□□□□ -0.02
LMO4P61968 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.9□□□□□ -0.02
LMO4P61968 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMO4P61968 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
LMO4P61968 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
LMO4P61968 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LMO4P61968 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC14.89□□□□□ -0.03
LMO4P61968 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
LMO4P61968 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC14.89□□□□□ -0.03
LMO4P61968 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC14.89□□□□□ -0.03
LMO4P61968 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMO4P61968 AL022342.1-201ENST00000400363 863 ntBASIC14.89□□□□□ -0.03
LMO4P61968 RBM17P3-201ENST00000417687 1192 ntBASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms