Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC109322.1-201ENST00000524499 1264 ntBASIC20.4■□□□□ 0.86
HTTP42858 AC009154.2-201ENST00000621177 724 ntBASIC20.4■□□□□ 0.86
HTTP42858 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 AC097374.2-201ENST00000618617 1306 ntBASIC20.4■□□□□ 0.86
HTTP42858 LINC00602-201ENST00000629776 2065 ntBASIC20.4■□□□□ 0.86
HTTP42858 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.4■□□□□ 0.86
HTTP42858 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.4■□□□□ 0.86
HTTP42858 AC005034.1-201ENST00000426657 489 ntBASIC20.4■□□□□ 0.86
HTTP42858 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.4■□□□□ 0.86
HTTP42858 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 AJ011932.1-201ENST00000621707 465 ntBASIC20.4■□□□□ 0.86
HTTP42858 AC007952.6-201ENST00000573168 2673 ntBASIC20.4■□□□□ 0.86
HTTP42858 AC003957.1-201ENST00000625108 2673 ntBASIC20.4■□□□□ 0.86
HTTP42858 SIGLEC16-201ENST00000599858 1437 ntBASIC20.4■□□□□ 0.86
HTTP42858 AC006504.4-201ENST00000592118 1568 ntBASIC20.4■□□□□ 0.86
HTTP42858 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HTTP42858 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HTTP42858 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
HTTP42858 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.39■□□□□ 0.85
HTTP42858 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HTTP42858 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HTTP42858 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.39■□□□□ 0.85
HTTP42858 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.39■□□□□ 0.85
HTTP42858 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HTTP42858 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
HTTP42858 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HTTP42858 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HTTP42858 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.39■□□□□ 0.85
HTTP42858 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.39■□□□□ 0.85
HTTP42858 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC20.39■□□□□ 0.85
HTTP42858 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HTTP42858 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.39■□□□□ 0.85
HTTP42858 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.39■□□□□ 0.85
HTTP42858 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.39■□□□□ 0.85
HTTP42858 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.39■□□□□ 0.85
HTTP42858 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.39■□□□□ 0.85
HTTP42858 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
HTTP42858 PAWRP1-201ENST00000451083 565 ntBASIC20.38■□□□□ 0.85
HTTP42858 AC108073.2-201ENST00000464002 357 ntBASIC20.38■□□□□ 0.85
HTTP42858 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC20.38■□□□□ 0.85
HTTP42858 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.38■□□□□ 0.85
HTTP42858 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.38■□□□□ 0.85
HTTP42858 AC018845.2-201ENST00000568326 409 ntBASIC20.38■□□□□ 0.85
HTTP42858 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC20.38■□□□□ 0.85
HTTP42858 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.38■□□□□ 0.85
HTTP42858 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.38■□□□□ 0.85
HTTP42858 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.38■□□□□ 0.85
HTTP42858 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.38■□□□□ 0.85
HTTP42858 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.38■□□□□ 0.85
HTTP42858 FEM1AP3-201ENST00000403722 1741 ntBASIC20.38■□□□□ 0.85
HTTP42858 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.38■□□□□ 0.85
HTTP42858 MIR149-201ENST00000384879 89 ntBASIC20.38■□□□□ 0.85
HTTP42858 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC20.38■□□□□ 0.85
HTTP42858 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
HTTP42858 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HTTP42858 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 AC087641.1-201ENST00000557561 1021 ntBASIC20.37■□□□□ 0.85
HTTP42858 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.37■□□□□ 0.85
HTTP42858 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC20.37■□□□□ 0.85
HTTP42858 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 AC005225.4-201ENST00000557330 545 ntBASIC20.37■□□□□ 0.85
HTTP42858 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC20.37■□□□□ 0.85
HTTP42858 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.37■□□□□ 0.85
HTTP42858 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.37■□□□□ 0.85
HTTP42858 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 AC148477.5-201ENST00000625164 1645 ntBASIC20.37■□□□□ 0.85
HTTP42858 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HTTP42858 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.36■□□□□ 0.85
HTTP42858 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.36■□□□□ 0.85
HTTP42858 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HTTP42858 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HTTP42858 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.36■□□□□ 0.85
HTTP42858 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.36■□□□□ 0.85
HTTP42858 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
HTTP42858 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.36■□□□□ 0.85
HTTP42858 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.36■□□□□ 0.85
HTTP42858 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HTTP42858 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HTTP42858 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HTTP42858 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms