Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXA9P31269 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.92■□□□□ 0.62
HOXA9P31269 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.92■□□□□ 0.62
HOXA9P31269 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.92■□□□□ 0.62
HOXA9P31269 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
HOXA9P31269 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
HOXA9P31269 AL020996.1-203ENST00000536896 2307 ntBASIC18.92■□□□□ 0.62
HOXA9P31269 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXA9P31269 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXA9P31269 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXA9P31269 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXA9P31269 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXA9P31269 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXA9P31269 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
HOXA9P31269 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.91■□□□□ 0.62
HOXA9P31269 AL049840.3-201ENST00000602669 611 ntBASIC18.91■□□□□ 0.62
HOXA9P31269 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
HOXA9P31269 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HOXA9P31269 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXA9P31269 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXA9P31269 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXA9P31269 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HOXA9P31269 KRT18P13-201ENST00000400056 1290 ntBASIC18.9■□□□□ 0.62
HOXA9P31269 HNRNPDP1-201ENST00000439535 754 ntBASIC18.9■□□□□ 0.62
HOXA9P31269 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXA9P31269 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXA9P31269 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.9■□□□□ 0.62
HOXA9P31269 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HOXA9P31269 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HOXA9P31269 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HOXA9P31269 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXA9P31269 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
HOXA9P31269 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
HOXA9P31269 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.89■□□□□ 0.61
HOXA9P31269 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 RPL13AP23-201ENST00000480739 586 ntBASIC18.89■□□□□ 0.61
HOXA9P31269 AC112698.1-201ENST00000510299 916 ntBASIC18.89■□□□□ 0.61
HOXA9P31269 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXA9P31269 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXA9P31269 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXA9P31269 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.89■□□□□ 0.61
HOXA9P31269 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.89■□□□□ 0.61
HOXA9P31269 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
HOXA9P31269 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 ZNF259P1-201ENST00000407656 1365 ntBASIC18.89■□□□□ 0.61
HOXA9P31269 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXA9P31269 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXA9P31269 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
HOXA9P31269 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
HOXA9P31269 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXA9P31269 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXA9P31269 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms