Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RPS3AP29-201ENST00000437728 769 ntBASIC24.8■■□□□ 1.56
MSH5O43196 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC24.8■■□□□ 1.56
MSH5O43196 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 AC105999.2-203ENST00000521030 663 ntTSL 3 BASIC24.8■■□□□ 1.56
MSH5O43196 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH5O43196 PRR29-207ENST00000580752 458 ntTSL 3 BASIC24.8■■□□□ 1.56
MSH5O43196 AC090772.3-201ENST00000583267 735 ntTSL 3 BASIC24.8■■□□□ 1.56
MSH5O43196 AC093424.1-201ENST00000604999 338 ntBASIC24.8■■□□□ 1.56
MSH5O43196 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 NOC2LP2-201ENST00000407594 1944 ntBASIC24.8■■□□□ 1.56
MSH5O43196 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH5O43196 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
MSH5O43196 LINC01311-201ENST00000565162 1445 ntBASIC24.79■■□□□ 1.56
MSH5O43196 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC24.79■■□□□ 1.56
MSH5O43196 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH5O43196 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC24.79■■□□□ 1.56
MSH5O43196 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC24.79■■□□□ 1.56
MSH5O43196 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC24.79■■□□□ 1.56
MSH5O43196 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC24.79■■□□□ 1.56
MSH5O43196 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH5O43196 AP003041.3-201ENST00000527151 707 ntBASIC24.79■■□□□ 1.56
MSH5O43196 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 MIR3652-201ENST00000579335 131 ntBASIC24.79■■□□□ 1.56
MSH5O43196 AC083849.1-201ENST00000615227 514 ntBASIC24.79■■□□□ 1.56
MSH5O43196 AC120498.9-201ENST00000339021 3867 ntBASIC24.79■■□□□ 1.56
MSH5O43196 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC24.79■■□□□ 1.56
MSH5O43196 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
MSH5O43196 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
MSH5O43196 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH5O43196 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH5O43196 KRT8P45-201ENST00000414328 1447 ntBASIC24.78■■□□□ 1.56
MSH5O43196 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
MSH5O43196 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH5O43196 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
MSH5O43196 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC24.78■■□□□ 1.56
MSH5O43196 LIPK-201ENST00000404190 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH5O43196 AL645634.1-201ENST00000418426 462 ntTSL 3 BASIC24.78■■□□□ 1.56
MSH5O43196 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC24.78■■□□□ 1.56
MSH5O43196 ATP5G2P1-201ENST00000433580 426 ntBASIC24.78■■□□□ 1.56
MSH5O43196 LINC02509-201ENST00000508790 691 ntTSL 3 BASIC24.78■■□□□ 1.56
MSH5O43196 AP003122.2-201ENST00000527332 486 ntTSL 3 BASIC24.78■■□□□ 1.56
MSH5O43196 SDHD-206ENST00000528182 754 ntTSL 3 BASIC24.78■■□□□ 1.56
MSH5O43196 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
MSH5O43196 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
MSH5O43196 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH5O43196 AP005264.6-201ENST00000592801 414 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH5O43196 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC24.78■■□□□ 1.56
MSH5O43196 AC096947.1-201ENST00000603233 470 ntBASIC24.78■■□□□ 1.56
MSH5O43196 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
MSH5O43196 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
MSH5O43196 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
MSH5O43196 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
MSH5O43196 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.77■■□□□ 1.56
MSH5O43196 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC24.77■■□□□ 1.56
MSH5O43196 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
MSH5O43196 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC24.77■■□□□ 1.56
MSH5O43196 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.77■■□□□ 1.56
MSH5O43196 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.77■■□□□ 1.56
MSH5O43196 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC24.77■■□□□ 1.56
MSH5O43196 PVRIG2P-201ENST00000435460 978 ntBASIC24.77■■□□□ 1.56
MSH5O43196 FDX1P1-201ENST00000449115 551 ntBASIC24.77■■□□□ 1.56
MSH5O43196 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC24.77■■□□□ 1.56
MSH5O43196 ZNF506-204ENST00000545006 1007 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC24.77■■□□□ 1.56
MSH5O43196 MTCYBP27-201ENST00000555160 670 ntBASIC24.77■■□□□ 1.56
MSH5O43196 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC24.77■■□□□ 1.56
MSH5O43196 BX255923.1-201ENST00000613309 681 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 AC084824.3-201ENST00000620472 856 ntBASIC24.77■■□□□ 1.56
MSH5O43196 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
MSH5O43196 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
MSH5O43196 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC24.77■■□□□ 1.56
MSH5O43196 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC24.77■■□□□ 1.56
MSH5O43196 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH5O43196 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
MSH5O43196 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
MSH5O43196 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
MSH5O43196 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
MSH5O43196 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC24.76■■□□□ 1.55
MSH5O43196 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
MSH5O43196 Z85996.1-201ENST00000494644 937 ntBASIC24.76■■□□□ 1.55
MSH5O43196 NDUFC1-206ENST00000505036 809 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms