Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 TSPY22P-201ENST00000427496 604 ntBASIC18.78■□□□□ 0.6
RPRD1AQ96P16 BX276092.5-203ENST00000456199 560 ntBASIC18.78■□□□□ 0.6
RPRD1AQ96P16 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 AC069148.1-201ENST00000608741 768 ntBASIC18.78■□□□□ 0.6
RPRD1AQ96P16 AC093458.2-201ENST00000623150 629 ntBASIC18.78■□□□□ 0.6
RPRD1AQ96P16 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPRD1AQ96P16 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AC104581.1-202ENST00000635932 2618 ntBASIC18.77■□□□□ 0.6
RPRD1AQ96P16 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AL390719.2-201ENST00000606993 987 ntBASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AL121672.3-201ENST00000608644 468 ntBASIC18.77■□□□□ 0.6
RPRD1AQ96P16 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPRD1AQ96P16 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
RPRD1AQ96P16 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RPRD1AQ96P16 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 AC090164.3-201ENST00000610780 2143 ntBASIC18.76■□□□□ 0.59
RPRD1AQ96P16 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 KRT8P26-201ENST00000534154 1276 ntBASIC18.76■□□□□ 0.59
RPRD1AQ96P16 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.76■□□□□ 0.59
RPRD1AQ96P16 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RPRD1AQ96P16 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms