Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC22.34■■□□□ 1.17
USP48Q86UV5 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
USP48Q86UV5 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC22.34■■□□□ 1.17
USP48Q86UV5 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC22.34■■□□□ 1.17
USP48Q86UV5 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
USP48Q86UV5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
USP48Q86UV5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC22.34■■□□□ 1.17
USP48Q86UV5 RNA5SP419-201ENST00000515908 135 ntBASIC22.34■■□□□ 1.17
USP48Q86UV5 MOK-208ENST00000519058 917 ntTSL 2 BASIC22.34■■□□□ 1.17
USP48Q86UV5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
USP48Q86UV5 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC22.34■■□□□ 1.17
USP48Q86UV5 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC22.34■■□□□ 1.17
USP48Q86UV5 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
USP48Q86UV5 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
USP48Q86UV5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC22.34■■□□□ 1.17
USP48Q86UV5 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
USP48Q86UV5 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
USP48Q86UV5 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
USP48Q86UV5 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
USP48Q86UV5 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
USP48Q86UV5 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
USP48Q86UV5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC22.33■■□□□ 1.17
USP48Q86UV5 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC22.33■■□□□ 1.17
USP48Q86UV5 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.33■■□□□ 1.17
USP48Q86UV5 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC22.33■■□□□ 1.17
USP48Q86UV5 IGHV3-47-201ENST00000425060 335 ntBASIC22.33■■□□□ 1.17
USP48Q86UV5 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 AP003733.1-201ENST00000491725 852 ntBASIC22.33■■□□□ 1.17
USP48Q86UV5 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 FICD-205ENST00000552758 603 ntTSL 2 BASIC22.33■■□□□ 1.17
USP48Q86UV5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC22.33■■□□□ 1.17
USP48Q86UV5 AP001005.1-201ENST00000571755 1248 ntBASIC22.33■■□□□ 1.17
USP48Q86UV5 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC22.33■■□□□ 1.17
USP48Q86UV5 Z69720.1-201ENST00000601483 472 ntBASIC22.33■■□□□ 1.17
USP48Q86UV5 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.33■■□□□ 1.17
USP48Q86UV5 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
USP48Q86UV5 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
USP48Q86UV5 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
USP48Q86UV5 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC22.33■■□□□ 1.16
USP48Q86UV5 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC22.33■■□□□ 1.16
USP48Q86UV5 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
USP48Q86UV5 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
USP48Q86UV5 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC22.33■■□□□ 1.16
USP48Q86UV5 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC22.32■■□□□ 1.16
USP48Q86UV5 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 SAPCD2P3-201ENST00000455031 850 ntBASIC22.32■■□□□ 1.16
USP48Q86UV5 PPIE-208ENST00000470213 927 ntTSL 3 BASIC22.32■■□□□ 1.16
USP48Q86UV5 BET1L-206ENST00000486280 665 ntTSL 3 BASIC22.32■■□□□ 1.16
USP48Q86UV5 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC22.32■■□□□ 1.16
USP48Q86UV5 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC22.32■■□□□ 1.16
USP48Q86UV5 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 AL390719.2-201ENST00000606993 987 ntBASIC22.32■■□□□ 1.16
USP48Q86UV5 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC22.32■■□□□ 1.16
USP48Q86UV5 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.32■■□□□ 1.16
USP48Q86UV5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP48Q86UV5 FP475955.4-201ENST00000623131 1990 ntBASIC22.32■■□□□ 1.16
USP48Q86UV5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
USP48Q86UV5 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.31■■□□□ 1.16
USP48Q86UV5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC22.31■■□□□ 1.16
USP48Q86UV5 AL031598.1-201ENST00000561511 1773 ntBASIC22.31■■□□□ 1.16
USP48Q86UV5 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC22.31■■□□□ 1.16
USP48Q86UV5 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC22.31■■□□□ 1.16
USP48Q86UV5 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC22.31■■□□□ 1.16
USP48Q86UV5 AC092865.5-201ENST00000545435 363 ntBASIC22.31■■□□□ 1.16
USP48Q86UV5 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP48Q86UV5 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC22.31■■□□□ 1.16
USP48Q86UV5 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms