Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CHD9Q3L8U1 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.27■□□□□ 0.67
CHD9Q3L8U1 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.27■□□□□ 0.67
CHD9Q3L8U1 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 AC244107.1-201ENST00000442033 332 ntBASIC19.26■□□□□ 0.67
CHD9Q3L8U1 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.26■□□□□ 0.67
CHD9Q3L8U1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.25■□□□□ 0.67
CHD9Q3L8U1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 PDPK2P-202ENST00000562415 1191 ntBASIC19.25■□□□□ 0.67
CHD9Q3L8U1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 SIGLEC16-201ENST00000599858 1437 ntBASIC19.25■□□□□ 0.67
CHD9Q3L8U1 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 AL031432.2-201ENST00000566714 459 ntBASIC19.25■□□□□ 0.67
CHD9Q3L8U1 AL928711.1-201ENST00000570165 459 ntBASIC19.25■□□□□ 0.67
CHD9Q3L8U1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHD9Q3L8U1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AC007952.6-201ENST00000573168 2673 ntBASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AC003957.1-201ENST00000625108 2673 ntBASIC19.24■□□□□ 0.67
CHD9Q3L8U1 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AP000867.4-201ENST00000641616 219 ntBASIC19.24■□□□□ 0.67
CHD9Q3L8U1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AC093512.1-201ENST00000617969 520 ntBASIC19.24■□□□□ 0.67
CHD9Q3L8U1 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AC006504.4-201ENST00000592118 1568 ntBASIC19.24■□□□□ 0.67
CHD9Q3L8U1 AC079776.2-201ENST00000641154 1609 ntBASIC19.24■□□□□ 0.67
CHD9Q3L8U1 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 AC141586.3-201ENST00000562166 1838 ntBASIC19.23■□□□□ 0.67
CHD9Q3L8U1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 AC136632.2-201ENST00000512891 861 ntBASIC19.23■□□□□ 0.67
CHD9Q3L8U1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHD9Q3L8U1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 HCG4B-203ENST00000450128 991 ntBASIC19.22■□□□□ 0.67
CHD9Q3L8U1 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.22■□□□□ 0.67
CHD9Q3L8U1 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms