Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 USP49-202ENST00000373010 2446 ntTSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
CKS1BP61024 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC12.79□□□□□ -0.36
CKS1BP61024 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 MAZ-216ENST00000616501 991 ntTSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
CKS1BP61024 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC12.79□□□□□ -0.36
CKS1BP61024 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC12.79□□□□□ -0.36
CKS1BP61024 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CKS1BP61024 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CKS1BP61024 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC12.78□□□□□ -0.36
CKS1BP61024 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CKS1BP61024 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC12.78□□□□□ -0.36
CKS1BP61024 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 PGR-209ENST00000617858 2816 ntTSL 5 BASIC12.78□□□□□ -0.36
CKS1BP61024 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CKS1BP61024 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC12.78□□□□□ -0.36
CKS1BP61024 NME1-207ENST00000480143 964 ntTSL 2 BASIC12.78□□□□□ -0.36
CKS1BP61024 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 MAX-217ENST00000557277 728 ntTSL 3 BASIC12.78□□□□□ -0.36
CKS1BP61024 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC12.78□□□□□ -0.36
CKS1BP61024 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CKS1BP61024 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC12.78□□□□□ -0.36
CKS1BP61024 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CKS1BP61024 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 AC012317.2-201ENST00000623305 2251 ntBASIC12.78□□□□□ -0.36
CKS1BP61024 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC12.78□□□□□ -0.36
CKS1BP61024 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 KRT8P8-201ENST00000434750 1448 ntBASIC12.78□□□□□ -0.36
CKS1BP61024 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC12.78□□□□□ -0.36
CKS1BP61024 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CKS1BP61024 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC12.78□□□□□ -0.36
CKS1BP61024 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC12.78□□□□□ -0.36
CKS1BP61024 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CKS1BP61024 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC12.77□□□□□ -0.36
CKS1BP61024 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CKS1BP61024 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CKS1BP61024 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms