Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
FOXA3P55318 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 UBALD1-205ENST00000590891 2641 ntBASIC13.72□□□□□ -0.21
FOXA3P55318 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
FOXA3P55318 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC13.72□□□□□ -0.21
FOXA3P55318 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 AL160286.2-201ENST00000567150 934 ntBASIC13.72□□□□□ -0.21
FOXA3P55318 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 AC006557.6-201ENST00000623071 864 ntBASIC13.72□□□□□ -0.21
FOXA3P55318 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
FOXA3P55318 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
FOXA3P55318 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC13.72□□□□□ -0.21
FOXA3P55318 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 CICP6-201ENST00000457191 2729 ntBASIC13.71□□□□□ -0.21
FOXA3P55318 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA3P55318 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
FOXA3P55318 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
FOXA3P55318 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
FOXA3P55318 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA3P55318 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA3P55318 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA3P55318 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA3P55318 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA3P55318 RHOD-202ENST00000532559 538 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA3P55318 ISCU-212ENST00000547005 795 ntTSL 3 BASIC13.71□□□□□ -0.21
FOXA3P55318 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
FOXA3P55318 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA3P55318 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA3P55318 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
FOXA3P55318 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA3P55318 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA3P55318 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
FOXA3P55318 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA3P55318 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA3P55318 AL121761.2-201ENST00000598007 1648 ntBASIC13.71□□□□□ -0.22
FOXA3P55318 AL023806.1-201ENST00000603994 1649 ntBASIC13.71□□□□□ -0.22
FOXA3P55318 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA3P55318 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA3P55318 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA3P55318 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.71□□□□□ -0.22
FOXA3P55318 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
FOXA3P55318 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA3P55318 MYLKP1-201ENST00000509077 1580 ntBASIC13.71□□□□□ -0.22
FOXA3P55318 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA3P55318 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA3P55318 AL118508.1-201ENST00000613502 2345 ntBASIC13.7□□□□□ -0.22
FOXA3P55318 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA3P55318 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms