Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 NEFHP1-201ENST00000412845 2629 ntBASIC20.6■□□□□ 0.89
USP11P51784 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP11P51784 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP11P51784 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP11P51784 LINC00602-201ENST00000629776 2065 ntBASIC20.6■□□□□ 0.89
USP11P51784 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP11P51784 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP11P51784 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
USP11P51784 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.59■□□□□ 0.89
USP11P51784 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.59■□□□□ 0.89
USP11P51784 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
USP11P51784 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.59■□□□□ 0.89
USP11P51784 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.59■□□□□ 0.89
USP11P51784 AC090616.6-201ENST00000582640 721 ntBASIC20.59■□□□□ 0.89
USP11P51784 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 AC069148.1-201ENST00000608741 768 ntBASIC20.59■□□□□ 0.89
USP11P51784 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
USP11P51784 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.59■□□□□ 0.89
USP11P51784 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP11P51784 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
USP11P51784 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.59■□□□□ 0.89
USP11P51784 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.59■□□□□ 0.89
USP11P51784 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP11P51784 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.58■□□□□ 0.89
USP11P51784 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
USP11P51784 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.58■□□□□ 0.89
USP11P51784 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP11P51784 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP11P51784 BICD1-207ENST00000551848 1962 ntBASIC20.58■□□□□ 0.89
USP11P51784 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP11P51784 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP11P51784 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.58■□□□□ 0.89
USP11P51784 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.58■□□□□ 0.89
USP11P51784 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.58■□□□□ 0.89
USP11P51784 UPK3BP1-201ENST00000428678 509 ntBASIC20.58■□□□□ 0.89
USP11P51784 CHCHD2P8-201ENST00000429873 447 ntBASIC20.58■□□□□ 0.89
USP11P51784 TSSC2-201ENST00000450217 709 ntBASIC20.58■□□□□ 0.89
USP11P51784 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.58■□□□□ 0.89
USP11P51784 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.58■□□□□ 0.89
USP11P51784 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
USP11P51784 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
USP11P51784 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.58■□□□□ 0.89
USP11P51784 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.58■□□□□ 0.89
USP11P51784 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP11P51784 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP11P51784 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP11P51784 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.58■□□□□ 0.88
USP11P51784 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP11P51784 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
USP11P51784 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP11P51784 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USP11P51784 AL096828.2-201ENST00000567259 1965 ntBASIC20.57■□□□□ 0.88
USP11P51784 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.57■□□□□ 0.88
USP11P51784 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.57■□□□□ 0.88
USP11P51784 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.57■□□□□ 0.88
USP11P51784 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.57■□□□□ 0.88
USP11P51784 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.57■□□□□ 0.88
USP11P51784 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.57■□□□□ 0.88
USP11P51784 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
USP11P51784 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.57■□□□□ 0.88
USP11P51784 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.57■□□□□ 0.88
USP11P51784 RN7SL606P-201ENST00000472779 293 ntBASIC20.57■□□□□ 0.88
USP11P51784 GUSBP12-201ENST00000513727 720 ntBASIC20.57■□□□□ 0.88
USP11P51784 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.57■□□□□ 0.88
USP11P51784 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.57■□□□□ 0.88
USP11P51784 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
USP11P51784 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
USP11P51784 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP11P51784 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.57■□□□□ 0.88
USP11P51784 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP11P51784 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.56■□□□□ 0.88
USP11P51784 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms