Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.9■□□□□ 0.94
SMARCA1P28370 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMARCA1P28370 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SMARCA1P28370 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMARCA1P28370 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMARCA1P28370 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.89■□□□□ 0.94
SMARCA1P28370 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.89■□□□□ 0.94
SMARCA1P28370 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 KRT18P1-202ENST00000452408 1331 ntBASIC20.89■□□□□ 0.93
SMARCA1P28370 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
SMARCA1P28370 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.89■□□□□ 0.93
SMARCA1P28370 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.89■□□□□ 0.93
SMARCA1P28370 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCA1P28370 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SMARCA1P28370 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCA1P28370 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
SMARCA1P28370 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.88■□□□□ 0.93
SMARCA1P28370 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
SMARCA1P28370 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SMARCA1P28370 AL020996.1-203ENST00000536896 2307 ntBASIC20.88■□□□□ 0.93
SMARCA1P28370 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SMARCA1P28370 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCA1P28370 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 AL845331.1-201ENST00000424978 1190 ntBASIC20.88■□□□□ 0.93
SMARCA1P28370 MTCL1P1-201ENST00000446207 792 ntBASIC20.88■□□□□ 0.93
SMARCA1P28370 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.88■□□□□ 0.93
SMARCA1P28370 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.88■□□□□ 0.93
SMARCA1P28370 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.88■□□□□ 0.93
SMARCA1P28370 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCA1P28370 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCA1P28370 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCA1P28370 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SMARCA1P28370 AC104581.1-202ENST00000635932 2618 ntBASIC20.88■□□□□ 0.93
SMARCA1P28370 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCA1P28370 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
SMARCA1P28370 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SMARCA1P28370 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SMARCA1P28370 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.87■□□□□ 0.93
SMARCA1P28370 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SMARCA1P28370 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
SMARCA1P28370 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.87■□□□□ 0.93
SMARCA1P28370 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCA1P28370 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
SMARCA1P28370 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SMARCA1P28370 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCA1P28370 AC092329.2-201ENST00000598402 547 ntBASIC20.87■□□□□ 0.93
SMARCA1P28370 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
SMARCA1P28370 AC093458.2-201ENST00000623150 629 ntBASIC20.87■□□□□ 0.93
SMARCA1P28370 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCA1P28370 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCA1P28370 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCA1P28370 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCA1P28370 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
SMARCA1P28370 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SMARCA1P28370 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 AC022898.2-201ENST00000616822 1312 ntBASIC20.86■□□□□ 0.93
SMARCA1P28370 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SMARCA1P28370 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCA1P28370 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms