Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP000867.4-201ENST00000641616 219 ntBASIC22.91■■□□□ 1.26
COL5A3P25940 AC002310.6-201ENST00000624451 1377 ntBASIC22.91■■□□□ 1.26
COL5A3P25940 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC22.91■■□□□ 1.26
COL5A3P25940 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
COL5A3P25940 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC22.9■■□□□ 1.26
COL5A3P25940 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC22.9■■□□□ 1.26
COL5A3P25940 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC22.9■■□□□ 1.26
COL5A3P25940 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
COL5A3P25940 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 ANO7L1-203ENST00000602586 1720 ntBASIC22.9■■□□□ 1.26
COL5A3P25940 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.9■■□□□ 1.26
COL5A3P25940 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
COL5A3P25940 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 RPS8P6-201ENST00000426177 609 ntBASIC22.9■■□□□ 1.26
COL5A3P25940 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
COL5A3P25940 BX005266.1-201ENST00000473402 457 ntBASIC22.9■■□□□ 1.26
COL5A3P25940 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC22.9■■□□□ 1.26
COL5A3P25940 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC22.9■■□□□ 1.26
COL5A3P25940 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.9■■□□□ 1.26
COL5A3P25940 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.9■■□□□ 1.26
COL5A3P25940 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC22.9■■□□□ 1.26
COL5A3P25940 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL5A3P25940 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
COL5A3P25940 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC22.89■■□□□ 1.26
COL5A3P25940 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 AC096633.1-201ENST00000422446 749 ntBASIC22.89■■□□□ 1.26
COL5A3P25940 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC22.89■■□□□ 1.26
COL5A3P25940 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC22.89■■□□□ 1.26
COL5A3P25940 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 MSRA-206ENST00000521209 814 ntTSL 3 BASIC22.89■■□□□ 1.26
COL5A3P25940 CIPC-205ENST00000555437 566 ntTSL 3 BASIC22.89■■□□□ 1.26
COL5A3P25940 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL5A3P25940 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC22.89■■□□□ 1.26
COL5A3P25940 AD001527.2-201ENST00000622994 785 ntBASIC22.89■■□□□ 1.26
COL5A3P25940 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.89■■□□□ 1.26
COL5A3P25940 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL5A3P25940 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL5A3P25940 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
COL5A3P25940 AC007952.6-201ENST00000573168 2673 ntBASIC22.89■■□□□ 1.25
COL5A3P25940 AC003957.1-201ENST00000625108 2673 ntBASIC22.89■■□□□ 1.25
COL5A3P25940 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC22.89■■□□□ 1.25
COL5A3P25940 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC22.89■■□□□ 1.25
COL5A3P25940 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC22.88■■□□□ 1.25
COL5A3P25940 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL5A3P25940 AC023274.1-201ENST00000418278 595 ntBASIC22.88■■□□□ 1.25
COL5A3P25940 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC22.88■■□□□ 1.25
COL5A3P25940 AC112482.1-201ENST00000492080 688 ntBASIC22.88■■□□□ 1.25
COL5A3P25940 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC22.88■■□□□ 1.25
COL5A3P25940 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC22.88■■□□□ 1.25
COL5A3P25940 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC22.88■■□□□ 1.25
COL5A3P25940 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC22.88■■□□□ 1.25
COL5A3P25940 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC22.88■■□□□ 1.25
COL5A3P25940 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC22.88■■□□□ 1.25
COL5A3P25940 AC064836.3-201ENST00000607928 673 ntBASIC22.88■■□□□ 1.25
COL5A3P25940 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL5A3P25940 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC22.88■■□□□ 1.25
COL5A3P25940 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.88■■□□□ 1.25
COL5A3P25940 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL5A3P25940 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.88■■□□□ 1.25
COL5A3P25940 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
COL5A3P25940 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL5A3P25940 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL5A3P25940 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.88■■□□□ 1.25
COL5A3P25940 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC22.88■■□□□ 1.25
COL5A3P25940 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC22.88■■□□□ 1.25
COL5A3P25940 MIR1199-201ENST00000621445 119 ntBASIC22.88■■□□□ 1.25
COL5A3P25940 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL5A3P25940 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC22.87■■□□□ 1.25
COL5A3P25940 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
COL5A3P25940 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
COL5A3P25940 AC022898.2-201ENST00000616822 1312 ntBASIC22.87■■□□□ 1.25
COL5A3P25940 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC22.87■■□□□ 1.25
COL5A3P25940 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC22.87■■□□□ 1.25
COL5A3P25940 AC148477.5-201ENST00000625164 1645 ntBASIC22.87■■□□□ 1.25
COL5A3P25940 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
COL5A3P25940 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
COL5A3P25940 AC005082.1-201ENST00000413042 2259 ntBASIC22.87■■□□□ 1.25
COL5A3P25940 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL5A3P25940 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
COL5A3P25940 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL5A3P25940 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC22.87■■□□□ 1.25
COL5A3P25940 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC22.87■■□□□ 1.25
COL5A3P25940 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC22.87■■□□□ 1.25
COL5A3P25940 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC22.87■■□□□ 1.25
COL5A3P25940 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC22.87■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms