Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC005082.1-201ENST00000413042 2259 ntBASIC31.51■■■□□ 2.64
CCDC88BA6NC98 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 SNCG-201ENST00000348795 684 ntTSL 2 BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 LAGE3P1-201ENST00000425356 484 ntBASIC31.51■■■□□ 2.63
CCDC88BA6NC98 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 AP001160.2-201ENST00000596071 487 ntBASIC31.51■■■□□ 2.63
CCDC88BA6NC98 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC88BA6NC98 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 GGCT-205ENST00000409436 954 ntTSL 3 BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 AL139424.1-201ENST00000607572 797 ntBASIC31.5■■■□□ 2.63
CCDC88BA6NC98 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC31.5■■■□□ 2.63
CCDC88BA6NC98 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 AC007967.2-201ENST00000432613 625 ntBASIC31.49■■■□□ 2.63
CCDC88BA6NC98 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC88BA6NC98 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 AC073621.1-201ENST00000392730 636 ntBASIC31.48■■■□□ 2.63
CCDC88BA6NC98 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 HS6ST1P1-201ENST00000481504 1234 ntBASIC31.48■■■□□ 2.63
CCDC88BA6NC98 AC040169.1-201ENST00000565382 521 ntBASIC31.48■■■□□ 2.63
CCDC88BA6NC98 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC88BA6NC98 PMPCAP1-201ENST00000508114 1576 ntBASIC31.48■■■□□ 2.63
CCDC88BA6NC98 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 AC004832.2-201ENST00000426397 482 ntBASIC31.47■■■□□ 2.63
CCDC88BA6NC98 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 ADM-207ENST00000530439 1839 ntTSL 2 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC31.47■■■□□ 2.63
CCDC88BA6NC98 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 PTGES2-AS1-201ENST00000443493 2100 ntBASIC31.46■■■□□ 2.63
CCDC88BA6NC98 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC31.46■■■□□ 2.63
CCDC88BA6NC98 AC010460.3-201ENST00000511359 1579 ntBASIC31.45■■■□□ 2.63
CCDC88BA6NC98 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CCDC88BA6NC98 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
CCDC88BA6NC98 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
CCDC88BA6NC98 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC31.45■■■□□ 2.62
CCDC88BA6NC98 URGCP-206ENST00000446958 365 ntTSL 2 BASIC31.45■■■□□ 2.62
CCDC88BA6NC98 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC31.45■■■□□ 2.62
CCDC88BA6NC98 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
CCDC88BA6NC98 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.62
CCDC88BA6NC98 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC31.45■■■□□ 2.62
CCDC88BA6NC98 KRT8P47-201ENST00000604727 1398 ntBASIC31.44■■■□□ 2.62
CCDC88BA6NC98 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC88BA6NC98 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
CCDC88BA6NC98 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC88BA6NC98 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC31.44■■■□□ 2.62
CCDC88BA6NC98 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC88BA6NC98 BX005266.1-201ENST00000473402 457 ntBASIC31.44■■■□□ 2.62
CCDC88BA6NC98 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC31.44■■■□□ 2.62
CCDC88BA6NC98 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC31.44■■■□□ 2.62
CCDC88BA6NC98 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC88BA6NC98 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC31.43■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms