Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PCED1CP-201ENST00000419887 785 ntBASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 KRT18P23-201ENST00000435622 1283 ntBASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 AC083849.1-201ENST00000615227 514 ntBASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 AC093458.2-201ENST00000623150 629 ntBASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 AC112497.1-201ENST00000624824 639 ntBASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 AC034236.2-201ENST00000606662 1610 ntBASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CHMP4CQ96CF2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 RASA4DP-201ENST00000460726 1199 ntBASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 SEC1P-202ENST00000473944 940 ntBASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 HYMAI.1-201ENST00000620949 238 ntBASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.78■■□□□ 1.08
CHMP4CQ96CF2 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 AC104581.1-202ENST00000635932 2618 ntBASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 VENTXP5-201ENST00000523979 775 ntBASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 AL390961.4-201ENST00000623958 2535 ntBASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CHMP4CQ96CF2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.77■■□□□ 1.07
CHMP4CQ96CF2 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CHMP4CQ96CF2 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CHMP4CQ96CF2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 AL499627.1-201ENST00000569373 2188 ntBASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 AC079602.3-201ENST00000623931 403 ntBASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 ABALON-201ENST00000629058 1903 ntBASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.76■■□□□ 1.07
CHMP4CQ96CF2 AC005332.1-201ENST00000577698 1310 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms