Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AP000867.3-201ENST00000524675 377 ntBASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AL512353.2-201ENST00000448759 1962 ntBASIC5.65□□□□□ -1.51
SYNE1Q8NF91 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 KRT8P26-201ENST00000534154 1276 ntBASIC5.65□□□□□ -1.51
SYNE1Q8NF91 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 FP475955.4-201ENST00000623131 1990 ntBASIC5.65□□□□□ -1.51
SYNE1Q8NF91 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AL031008.1-201ENST00000619963 541 ntBASIC5.65□□□□□ -1.51
SYNE1Q8NF91 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 BX276092.5-203ENST00000456199 560 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC079602.3-201ENST00000623931 403 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 PHB2-202ENST00000440277 996 ntTSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SEC1P-202ENST00000473944 940 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MIR3917-201ENST00000580971 93 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC069148.1-201ENST00000608741 768 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 IGHV3-47-201ENST00000425060 335 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AL136038.4-201ENST00000603606 1261 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TEX21P-204ENST00000641479 1693 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 BCL2-203ENST00000589955 5011 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MCCD1P1-208ENST00000445732 328 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 RNF126P1-202ENST00000569893 925 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms