Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MIR4469-201ENST00000583919 79 ntBASIC15.18■□□□□ 0.02
VPS13CQ709C8 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13CQ709C8 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13CQ709C8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VPS13CQ709C8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13CQ709C8 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC15.18■□□□□ 0.02
VPS13CQ709C8 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13CQ709C8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13CQ709C8 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS13CQ709C8 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.18■□□□□ 0.02
VPS13CQ709C8 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.18■□□□□ 0.02
VPS13CQ709C8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13CQ709C8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 AL356309.3-201ENST00000624132 1934 ntBASIC15.17■□□□□ 0.02
VPS13CQ709C8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 OR7E14P-202ENST00000530490 1290 ntBASIC15.17■□□□□ 0.02
VPS13CQ709C8 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13CQ709C8 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VPS13CQ709C8 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13CQ709C8 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13CQ709C8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS13CQ709C8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS13CQ709C8 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms