Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL28A1Q2UY09 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 HTR5BP-201ENST00000430851 1154 ntBASIC17.53■□□□□ 0.4
COL28A1Q2UY09 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 AC139887.3-201ENST00000568585 713 ntBASIC17.53■□□□□ 0.4
COL28A1Q2UY09 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 AL049840.3-201ENST00000602669 611 ntBASIC17.53■□□□□ 0.4
COL28A1Q2UY09 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL28A1Q2UY09 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 RPSAP43-201ENST00000402237 625 ntBASIC17.52■□□□□ 0.4
COL28A1Q2UY09 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.52■□□□□ 0.4
COL28A1Q2UY09 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 SEC1P-202ENST00000473944 940 ntBASIC17.52■□□□□ 0.4
COL28A1Q2UY09 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 MIR7706-201ENST00000613747 67 ntBASIC17.52■□□□□ 0.4
COL28A1Q2UY09 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.52■□□□□ 0.4
COL28A1Q2UY09 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL28A1Q2UY09 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.52■□□□□ 0.39
COL28A1Q2UY09 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.52■□□□□ 0.39
COL28A1Q2UY09 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL28A1Q2UY09 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.52■□□□□ 0.39
COL28A1Q2UY09 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
COL28A1Q2UY09 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms