Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC14.2□□□□□ -0.14
CXCL1P09341 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 CNN2P6-201ENST00000439038 900 ntBASIC14.2□□□□□ -0.14
CXCL1P09341 SPI1-203ENST00000533030 661 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC14.2□□□□□ -0.14
CXCL1P09341 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.2□□□□□ -0.14
CXCL1P09341 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 NME9-203ENST00000383180 2133 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CXCL1P09341 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.2□□□□□ -0.14
CXCL1P09341 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
CXCL1P09341 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CXCL1P09341 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CXCL1P09341 AC132872.4-202ENST00000622924 2756 ntBASIC14.19□□□□□ -0.14
CXCL1P09341 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.19□□□□□ -0.14
CXCL1P09341 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.19□□□□□ -0.14
CXCL1P09341 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CXCL1P09341 AC073210.2-201ENST00000430369 194 ntBASIC14.19□□□□□ -0.14
CXCL1P09341 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.19□□□□□ -0.14
CXCL1P09341 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC14.19□□□□□ -0.14
CXCL1P09341 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC14.19□□□□□ -0.14
CXCL1P09341 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.19□□□□□ -0.14
CXCL1P09341 OR10C1-204ENST00000622521 1039 ntBASIC14.19□□□□□ -0.14
CXCL1P09341 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.19□□□□□ -0.14
CXCL1P09341 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CXCL1P09341 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CXCL1P09341 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC14.19□□□□□ -0.14
CXCL1P09341 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CXCL1P09341 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 AC023824.1-201ENST00000562945 2975 ntBASIC14.19□□□□□ -0.14
CXCL1P09341 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.19□□□□□ -0.14
CXCL1P09341 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.19□□□□□ -0.14
CXCL1P09341 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CXCL1P09341 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CXCL1P09341 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 AC006116.8-202ENST00000587620 1550 ntBASIC14.18□□□□□ -0.14
CXCL1P09341 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 AC005052.1-201ENST00000625181 2492 ntBASIC14.18□□□□□ -0.14
CXCL1P09341 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.18□□□□□ -0.14
CXCL1P09341 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.18□□□□□ -0.14
CXCL1P09341 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 STX7-201ENST00000367937 1090 ntTSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 CYP2T1P-201ENST00000432607 1285 ntBASIC14.18□□□□□ -0.14
CXCL1P09341 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
CXCL1P09341 NTF6G-201ENST00000591094 616 ntBASIC14.18□□□□□ -0.14
CXCL1P09341 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CXCL1P09341 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CXCL1P09341 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CXCL1P09341 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms