Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 AC073621.1-201ENST00000392730 636 ntBASIC18.35■□□□□ 0.53
COL4A2P08572 LAGE3P1-201ENST00000425356 484 ntBASIC18.35■□□□□ 0.53
COL4A2P08572 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.35■□□□□ 0.53
COL4A2P08572 UNC93B6-202ENST00000528242 690 ntBASIC18.35■□□□□ 0.53
COL4A2P08572 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.35■□□□□ 0.53
COL4A2P08572 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.35■□□□□ 0.53
COL4A2P08572 NKAPP1-205ENST00000585790 367 ntBASIC18.35■□□□□ 0.53
COL4A2P08572 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.35■□□□□ 0.53
COL4A2P08572 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL4A2P08572 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A2P08572 ALG1L5P-201ENST00000482043 771 ntBASIC18.35■□□□□ 0.53
COL4A2P08572 AP001160.2-201ENST00000596071 487 ntBASIC18.35■□□□□ 0.53
COL4A2P08572 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A2P08572 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A2P08572 LINC00602-201ENST00000629776 2065 ntBASIC18.34■□□□□ 0.53
COL4A2P08572 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A2P08572 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A2P08572 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL4A2P08572 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A2P08572 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL4A2P08572 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A2P08572 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A2P08572 RPS2P28-201ENST00000314255 741 ntBASIC18.34■□□□□ 0.53
COL4A2P08572 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A2P08572 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL4A2P08572 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL4A2P08572 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A2P08572 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A2P08572 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A2P08572 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A2P08572 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A2P08572 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A2P08572 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A2P08572 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.33■□□□□ 0.53
COL4A2P08572 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A2P08572 AC010460.3-201ENST00000511359 1579 ntBASIC18.33■□□□□ 0.53
COL4A2P08572 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.33■□□□□ 0.53
COL4A2P08572 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A2P08572 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A2P08572 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A2P08572 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A2P08572 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.33■□□□□ 0.52
COL4A2P08572 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A2P08572 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A2P08572 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.33■□□□□ 0.52
COL4A2P08572 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.33■□□□□ 0.52
COL4A2P08572 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.33■□□□□ 0.52
COL4A2P08572 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
COL4A2P08572 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A2P08572 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A2P08572 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.33■□□□□ 0.52
COL4A2P08572 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A2P08572 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A2P08572 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A2P08572 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A2P08572 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A2P08572 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A2P08572 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
COL4A2P08572 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A2P08572 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 AC132938.6-201ENST00000623828 1655 ntBASIC18.32■□□□□ 0.52
COL4A2P08572 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 AC009947.1-201ENST00000444350 727 ntBASIC18.32■□□□□ 0.52
COL4A2P08572 KRT18P3-201ENST00000451602 1288 ntBASIC18.32■□□□□ 0.52
COL4A2P08572 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A2P08572 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL4A2P08572 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL4A2P08572 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A2P08572 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A2P08572 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A2P08572 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A2P08572 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 SIGLEC16-201ENST00000599858 1437 ntBASIC18.32■□□□□ 0.52
COL4A2P08572 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A2P08572 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A2P08572 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.32■□□□□ 0.52
COL4A2P08572 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A2P08572 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.32■□□□□ 0.52
COL4A2P08572 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms