Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 HNRNPDP1-201ENST00000439535 754 ntBASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 AC005336.2-201ENST00000593183 939 ntBASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 AC027601.4-201ENST00000611259 610 ntBASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDHGA1Q9Y5H4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 MIR149-201ENST00000384879 89 ntBASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 AL591424.1-201ENST00000442569 1213 ntBASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 AC068472.1-201ENST00000474589 881 ntBASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 FAM197Y3-203ENST00000618346 717 ntBASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 AC141586.3-201ENST00000562166 1838 ntBASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHGA1Q9Y5H4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 HEIH-201ENST00000623091 1652 ntBASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 PGAM5P1-201ENST00000518923 814 ntBASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 IGHV3-22-201ENST00000520721 359 ntBASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 AP001269.4-201ENST00000609611 512 ntBASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 INTS4P1-201ENST00000438455 1935 ntBASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHGA1Q9Y5H4 AC112907.3-201ENST00000577781 2400 ntBASIC17.52■□□□□ 0.4
PCDHGA1Q9Y5H4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHGA1Q9Y5H4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHGA1Q9Y5H4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHGA1Q9Y5H4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHGA1Q9Y5H4 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHGA1Q9Y5H4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHGA1Q9Y5H4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms