Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.24■□□□□ 0.99
TRERF1Q96PN7 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRERF1Q96PN7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRERF1Q96PN7 MTMR9LP-203ENST00000426597 1545 ntBASIC21.24■□□□□ 0.99
TRERF1Q96PN7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.24■□□□□ 0.99
TRERF1Q96PN7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TRERF1Q96PN7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
TRERF1Q96PN7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 Z83836.1-201ENST00000624605 1642 ntBASIC21.23■□□□□ 0.99
TRERF1Q96PN7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 AP003733.1-201ENST00000491725 852 ntBASIC21.23■□□□□ 0.99
TRERF1Q96PN7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 AC005332.3-201ENST00000589904 676 ntBASIC21.23■□□□□ 0.99
TRERF1Q96PN7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 KRT18P1-202ENST00000452408 1331 ntBASIC21.23■□□□□ 0.99
TRERF1Q96PN7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
TRERF1Q96PN7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 AL049812.1-201ENST00000432563 2267 ntBASIC21.22■□□□□ 0.99
TRERF1Q96PN7 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 AL133373.2-201ENST00000623187 2828 ntBASIC21.22■□□□□ 0.99
TRERF1Q96PN7 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 MPI-205ENST00000562606 1052 ntTSL 3 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 IL11-204ENST00000590625 1028 ntTSL 2 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRERF1Q96PN7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 KRT8P50-201ENST00000562022 1438 ntBASIC21.21■□□□□ 0.99
TRERF1Q96PN7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.21■□□□□ 0.99
TRERF1Q96PN7 PRELID1P1-202ENST00000567272 903 ntBASIC21.21■□□□□ 0.99
TRERF1Q96PN7 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms