Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 AC243591.1-201ENST00000452967 1364 ntBASIC19.42■□□□□ 0.7
ZNF558Q96NG5 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ZNF558Q96NG5 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.42■□□□□ 0.7
ZNF558Q96NG5 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF558Q96NG5 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF558Q96NG5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF558Q96NG5 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF558Q96NG5 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 KRT18P58-201ENST00000527480 1120 ntBASIC19.41■□□□□ 0.7
ZNF558Q96NG5 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 AL138831.2-201ENST00000606564 490 ntBASIC19.41■□□□□ 0.7
ZNF558Q96NG5 AP001269.4-201ENST00000609611 512 ntBASIC19.41■□□□□ 0.7
ZNF558Q96NG5 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF558Q96NG5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 KRT18P13-201ENST00000400056 1290 ntBASIC19.4■□□□□ 0.7
ZNF558Q96NG5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 AC139887.3-201ENST00000568585 713 ntBASIC19.4■□□□□ 0.7
ZNF558Q96NG5 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 MIR7706-201ENST00000613747 67 ntBASIC19.4■□□□□ 0.7
ZNF558Q96NG5 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 INTS4P1-201ENST00000438455 1935 ntBASIC19.4■□□□□ 0.7
ZNF558Q96NG5 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 LINC00602-201ENST00000629776 2065 ntBASIC19.4■□□□□ 0.7
ZNF558Q96NG5 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF558Q96NG5 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
ZNF558Q96NG5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 AC106730.1-201ENST00000566722 1090 ntBASIC19.39■□□□□ 0.69
ZNF558Q96NG5 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 AC011467.2-201ENST00000598425 242 ntBASIC19.39■□□□□ 0.69
ZNF558Q96NG5 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 AL049840.3-201ENST00000602669 611 ntBASIC19.39■□□□□ 0.69
ZNF558Q96NG5 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 FAM215A-202ENST00000632077 792 ntBASIC19.39■□□□□ 0.69
ZNF558Q96NG5 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
ZNF558Q96NG5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF558Q96NG5 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ZNF558Q96NG5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
ZNF558Q96NG5 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF558Q96NG5 RPS2P28-201ENST00000314255 741 ntBASIC19.38■□□□□ 0.69
ZNF558Q96NG5 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms