Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
LMX1AQ8TE12 SDHAP2-201ENST00000455183 2001 ntBASIC17.82■□□□□ 0.44
LMX1AQ8TE12 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 AC113404.2-201ENST00000507884 177 ntBASIC17.82■□□□□ 0.44
LMX1AQ8TE12 AL121912.1-201ENST00000603683 238 ntBASIC17.82■□□□□ 0.44
LMX1AQ8TE12 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LMX1AQ8TE12 AL499627.1-201ENST00000569373 2188 ntBASIC17.81■□□□□ 0.44
LMX1AQ8TE12 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 AP002469.2-201ENST00000531724 424 ntBASIC17.81■□□□□ 0.44
LMX1AQ8TE12 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.81■□□□□ 0.44
LMX1AQ8TE12 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.81■□□□□ 0.44
LMX1AQ8TE12 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LMX1AQ8TE12 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 AKR1C7P-201ENST00000305623 895 ntBASIC17.8■□□□□ 0.44
LMX1AQ8TE12 POM121L3P-201ENST00000419331 1163 ntBASIC17.8■□□□□ 0.44
LMX1AQ8TE12 AC079776.4-201ENST00000511039 504 ntBASIC17.8■□□□□ 0.44
LMX1AQ8TE12 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1AQ8TE12 AL024508.2-201ENST00000607749 1894 ntBASIC17.8■□□□□ 0.44
LMX1AQ8TE12 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1AQ8TE12 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms