Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SIX3O95343 AC092338.2-201ENST00000568827 1415 ntBASIC17.92■□□□□ 0.46
SIX3O95343 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
SIX3O95343 MIR718-201ENST00000390190 70 ntBASIC17.92■□□□□ 0.46
SIX3O95343 KRT18P23-201ENST00000435622 1283 ntBASIC17.92■□□□□ 0.46
SIX3O95343 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
SIX3O95343 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.92■□□□□ 0.46
SIX3O95343 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.92■□□□□ 0.46
SIX3O95343 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
SIX3O95343 FITM1-202ENST00000559294 800 ntBASIC17.92■□□□□ 0.46
SIX3O95343 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
SIX3O95343 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.92■□□□□ 0.46
SIX3O95343 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 AC009102.3-201ENST00000623118 1491 ntBASIC17.92■□□□□ 0.46
SIX3O95343 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SIX3O95343 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.92■□□□□ 0.46
SIX3O95343 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.92■□□□□ 0.46
SIX3O95343 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.92■□□□□ 0.46
SIX3O95343 LTB4R2-202ENST00000528054 3092 ntBASIC17.92■□□□□ 0.46
SIX3O95343 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SIX3O95343 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SIX3O95343 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
SIX3O95343 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SIX3O95343 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX3O95343 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX3O95343 HOXB1-202ENST00000577092 1414 ntBASIC17.91■□□□□ 0.46
SIX3O95343 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 MIR1238-201ENST00000408483 83 ntBASIC17.91■□□□□ 0.46
SIX3O95343 TSPY17P-201ENST00000450329 467 ntBASIC17.91■□□□□ 0.46
SIX3O95343 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX3O95343 SNORA78-201ENST00000459373 127 ntBASIC17.91■□□□□ 0.46
SIX3O95343 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX3O95343 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX3O95343 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX3O95343 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX3O95343 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SIX3O95343 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX3O95343 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX3O95343 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX3O95343 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SIX3O95343 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX3O95343 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX3O95343 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SIX3O95343 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SIX3O95343 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SIX3O95343 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SIX3O95343 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 MIR149-201ENST00000384879 89 ntBASIC17.9■□□□□ 0.46
SIX3O95343 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SIX3O95343 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX3O95343 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX3O95343 AL355075.4-201ENST00000554988 638 ntBASIC17.9■□□□□ 0.46
SIX3O95343 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SIX3O95343 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SIX3O95343 TMEM191A-211ENST00000637163 1067 ntBASIC17.9■□□□□ 0.46
SIX3O95343 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 HCG11-201ENST00000411553 5696 ntBASIC17.9■□□□□ 0.46
SIX3O95343 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SIX3O95343 AC090340.1-201ENST00000620778 4980 ntBASIC17.9■□□□□ 0.46
SIX3O95343 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX3O95343 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SIX3O95343 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SIX3O95343 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX3O95343 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
SIX3O95343 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.89■□□□□ 0.46
SIX3O95343 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SIX3O95343 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SIX3O95343 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SIX3O95343 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SIX3O95343 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms