Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CRYGEP-201ENST00000412192 528 ntBASIC25.66■■□□□ 1.7
NPHP4O75161 HCG4B-203ENST00000450128 991 ntBASIC25.66■■□□□ 1.7
NPHP4O75161 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC25.66■■□□□ 1.7
NPHP4O75161 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP4O75161 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP4O75161 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP4O75161 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC25.66■■□□□ 1.7
NPHP4O75161 PWWP2AP1-201ENST00000429776 2273 ntBASIC25.65■■□□□ 1.7
NPHP4O75161 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP4O75161 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP4O75161 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
NPHP4O75161 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP4O75161 CD9-202ENST00000382515 1229 ntTSL 5 BASIC25.65■■□□□ 1.7
NPHP4O75161 ELK2BP-201ENST00000415014 1224 ntBASIC25.65■■□□□ 1.7
NPHP4O75161 KRT18P65-201ENST00000439811 1286 ntBASIC25.65■■□□□ 1.7
NPHP4O75161 AC108073.2-201ENST00000464002 357 ntBASIC25.65■■□□□ 1.7
NPHP4O75161 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC25.65■■□□□ 1.7
NPHP4O75161 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC25.65■■□□□ 1.7
NPHP4O75161 METTL23-205ENST00000588302 925 ntTSL 5 BASIC25.65■■□□□ 1.7
NPHP4O75161 AC093512.1-201ENST00000617969 520 ntBASIC25.65■■□□□ 1.7
NPHP4O75161 PMPCAP1-201ENST00000508114 1576 ntBASIC25.65■■□□□ 1.7
NPHP4O75161 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP4O75161 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
NPHP4O75161 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP4O75161 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC25.65■■□□□ 1.7
NPHP4O75161 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP4O75161 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP4O75161 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP4O75161 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC25.64■■□□□ 1.7
NPHP4O75161 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP4O75161 METTL26-205ENST00000397666 726 ntTSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC25.64■■□□□ 1.7
NPHP4O75161 AP000344.2-201ENST00000512987 629 ntBASIC25.64■■□□□ 1.7
NPHP4O75161 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC25.64■■□□□ 1.7
NPHP4O75161 MAL2-202ENST00000531508 892 ntTSL 3 BASIC25.64■■□□□ 1.7
NPHP4O75161 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
NPHP4O75161 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC25.64■■□□□ 1.7
NPHP4O75161 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP4O75161 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.64■■□□□ 1.7
NPHP4O75161 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP4O75161 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC25.64■■□□□ 1.7
NPHP4O75161 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP4O75161 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP4O75161 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
NPHP4O75161 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
NPHP4O75161 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC25.64■■□□□ 1.69
NPHP4O75161 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
NPHP4O75161 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC25.63■■□□□ 1.69
NPHP4O75161 PUDP-206ENST00000540122 825 ntTSL 2 BASIC25.63■■□□□ 1.69
NPHP4O75161 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC25.63■■□□□ 1.69
NPHP4O75161 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC25.63■■□□□ 1.69
NPHP4O75161 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP4O75161 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
NPHP4O75161 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP4O75161 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC25.63■■□□□ 1.69
NPHP4O75161 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP4O75161 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP4O75161 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC25.63■■□□□ 1.69
NPHP4O75161 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
NPHP4O75161 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP4O75161 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
NPHP4O75161 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
NPHP4O75161 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP4O75161 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
NPHP4O75161 MIR4751-201ENST00000578027 74 ntBASIC25.63■■□□□ 1.69
NPHP4O75161 LINC00602-201ENST00000629776 2065 ntBASIC25.63■■□□□ 1.69
NPHP4O75161 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP4O75161 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP4O75161 SIGLEC16-201ENST00000599858 1437 ntBASIC25.62■■□□□ 1.69
NPHP4O75161 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC25.62■■□□□ 1.69
NPHP4O75161 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
NPHP4O75161 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP4O75161 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP4O75161 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC25.62■■□□□ 1.69
NPHP4O75161 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP4O75161 AC092474.2-201ENST00000424288 719 ntBASIC25.62■■□□□ 1.69
NPHP4O75161 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP4O75161 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC25.62■■□□□ 1.69
NPHP4O75161 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC25.62■■□□□ 1.69
NPHP4O75161 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC25.62■■□□□ 1.69
NPHP4O75161 COX5A-202ENST00000562233 441 ntTSL 3 BASIC25.62■■□□□ 1.69
NPHP4O75161 AC138761.1-201ENST00000584393 385 ntBASIC25.62■■□□□ 1.69
NPHP4O75161 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC25.62■■□□□ 1.69
NPHP4O75161 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC25.62■■□□□ 1.69
NPHP4O75161 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC25.62■■□□□ 1.69
NPHP4O75161 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP4O75161 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
NPHP4O75161 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP4O75161 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
NPHP4O75161 CD99-202ENST00000381180 530 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP4O75161 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC25.61■■□□□ 1.69
NPHP4O75161 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms