Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC31.19■■■□□ 2.58
CUX2O14529 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC31.19■■■□□ 2.58
CUX2O14529 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC31.19■■■□□ 2.58
CUX2O14529 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CUX2O14529 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC31.19■■■□□ 2.58
CUX2O14529 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX2O14529 LBX2-AS1-202ENST00000603175 2083 ntBASIC31.18■■■□□ 2.58
CUX2O14529 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX2O14529 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX2O14529 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX2O14529 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
CUX2O14529 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC31.18■■■□□ 2.58
CUX2O14529 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC31.18■■■□□ 2.58
CUX2O14529 HCG4B-203ENST00000450128 991 ntBASIC31.18■■■□□ 2.58
CUX2O14529 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
CUX2O14529 NAA60-208ENST00000570819 833 ntTSL 2 BASIC31.18■■■□□ 2.58
CUX2O14529 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
CUX2O14529 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CUX2O14529 TP73-202ENST00000354437 2140 ntTSL 5 BASIC31.18■■■□□ 2.58
CUX2O14529 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC31.18■■■□□ 2.58
CUX2O14529 TEX21P-204ENST00000641479 1693 ntBASIC31.18■■■□□ 2.58
CUX2O14529 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CUX2O14529 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
CUX2O14529 SOD2-201ENST00000337404 991 ntTSL 2 BASIC31.17■■■□□ 2.58
CUX2O14529 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CUX2O14529 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CUX2O14529 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CUX2O14529 FAM207CP-201ENST00000443486 507 ntBASIC31.17■■■□□ 2.58
CUX2O14529 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC31.17■■■□□ 2.58
CUX2O14529 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CUX2O14529 MAL2-202ENST00000531508 892 ntTSL 3 BASIC31.17■■■□□ 2.58
CUX2O14529 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CUX2O14529 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC31.17■■■□□ 2.58
CUX2O14529 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CUX2O14529 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC31.17■■■□□ 2.58
CUX2O14529 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC31.17■■■□□ 2.58
CUX2O14529 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC31.16■■■□□ 2.58
CUX2O14529 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC31.16■■■□□ 2.58
CUX2O14529 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC31.16■■■□□ 2.58
CUX2O14529 TFAMP1-201ENST00000412727 736 ntBASIC31.16■■■□□ 2.58
CUX2O14529 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC31.16■■■□□ 2.58
CUX2O14529 NAA50-208ENST00000497255 789 ntTSL 5 BASIC31.16■■■□□ 2.58
CUX2O14529 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
CUX2O14529 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC31.16■■■□□ 2.58
CUX2O14529 SDCCAG3P1-201ENST00000589292 1150 ntBASIC31.16■■■□□ 2.58
CUX2O14529 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
CUX2O14529 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CUX2O14529 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC31.16■■■□□ 2.58
CUX2O14529 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CUX2O14529 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CUX2O14529 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CUX2O14529 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CUX2O14529 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC31.16■■■□□ 2.58
CUX2O14529 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CUX2O14529 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC31.15■■■□□ 2.58
CUX2O14529 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX2O14529 AC023141.5-201ENST00000458585 616 ntBASIC31.15■■■□□ 2.58
CUX2O14529 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC31.15■■■□□ 2.58
CUX2O14529 AC006333.2-201ENST00000607957 2099 ntBASIC31.15■■■□□ 2.58
CUX2O14529 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX2O14529 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
CUX2O14529 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX2O14529 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CUX2O14529 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CUX2O14529 CRYGEP-201ENST00000412192 528 ntBASIC31.14■■■□□ 2.58
CUX2O14529 ELK2BP-201ENST00000415014 1224 ntBASIC31.14■■■□□ 2.58
CUX2O14529 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC31.14■■■□□ 2.58
CUX2O14529 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC31.14■■■□□ 2.58
CUX2O14529 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.58
CUX2O14529 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
CUX2O14529 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CUX2O14529 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC31.14■■■□□ 2.58
CUX2O14529 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CUX2O14529 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC31.14■■■□□ 2.58
CUX2O14529 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
CUX2O14529 CTNS-203ENST00000399306 803 ntTSL 3 BASIC31.14■■■□□ 2.57
CUX2O14529 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC31.14■■■□□ 2.57
CUX2O14529 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC31.14■■■□□ 2.57
CUX2O14529 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC31.14■■■□□ 2.57
CUX2O14529 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
CUX2O14529 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
CUX2O14529 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
CUX2O14529 HFE2-206ENST00000634927 506 ntTSL 4 BASIC31.14■■■□□ 2.57
CUX2O14529 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC31.14■■■□□ 2.57
CUX2O14529 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC31.14■■■□□ 2.57
CUX2O14529 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
CUX2O14529 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
CUX2O14529 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.57
CUX2O14529 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
CUX2O14529 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX2O14529 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX2O14529 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX2O14529 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC31.13■■■□□ 2.57
CUX2O14529 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX2O14529 AC034236.2-201ENST00000606662 1610 ntBASIC31.13■■■□□ 2.57
CUX2O14529 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CUX2O14529 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC31.13■■■□□ 2.57
CUX2O14529 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC31.13■■■□□ 2.57
CUX2O14529 AC067863.1-201ENST00000494933 530 ntBASIC31.13■■■□□ 2.57
CUX2O14529 AC113404.2-201ENST00000507884 177 ntBASIC31.13■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms