Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC23.82■■□□□ 1.4
TRIM35Q9UPQ4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM35Q9UPQ4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.82■■□□□ 1.4
TRIM35Q9UPQ4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM35Q9UPQ4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
TRIM35Q9UPQ4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
TRIM35Q9UPQ4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC23.82■■□□□ 1.4
TRIM35Q9UPQ4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 MIR3180-1-201ENST00000580374 94 ntBASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 MIR3180-3-201ENST00000584616 94 ntBASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM35Q9UPQ4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 BICD1-207ENST00000551848 1962 ntBASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 AC093010.1-201ENST00000473625 1624 ntBASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC23.8■■□□□ 1.4
TRIM35Q9UPQ4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 LINC00602-201ENST00000629776 2065 ntBASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 RN7SL606P-201ENST00000472779 293 ntBASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
TRIM35Q9UPQ4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 AL845331.1-201ENST00000424978 1190 ntBASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 AC069148.1-201ENST00000608741 768 ntBASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM35Q9UPQ4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms