Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX4Q9UIU6 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 AC093677.2-201ENST00000600169 1863 ntBASIC19.58■□□□□ 0.73
SIX4Q9UIU6 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 AC135776.1-201ENST00000319817 2481 ntBASIC19.58■□□□□ 0.73
SIX4Q9UIU6 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.58■□□□□ 0.73
SIX4Q9UIU6 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
SIX4Q9UIU6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 KRT8P26-201ENST00000534154 1276 ntBASIC19.57■□□□□ 0.72
SIX4Q9UIU6 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 LINC00167-201ENST00000530583 1419 ntBASIC19.57■□□□□ 0.72
SIX4Q9UIU6 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SIX4Q9UIU6 AL353692.3-201ENST00000407031 1396 ntBASIC19.57■□□□□ 0.72
SIX4Q9UIU6 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 AP002383.4-201ENST00000442518 975 ntBASIC19.56■□□□□ 0.72
SIX4Q9UIU6 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SIX4Q9UIU6 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms