Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LINC00477Q96M19 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 FLJ13224-201ENST00000313737 1514 ntBASIC13.77□□□□□ -0.21
LINC00477Q96M19 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 MESTP1-201ENST00000404287 994 ntBASIC13.77□□□□□ -0.21
LINC00477Q96M19 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 CYGB-204ENST00000589342 815 ntTSL 3 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 AC005332.8-201ENST00000622750 2735 ntBASIC13.77□□□□□ -0.21
LINC00477Q96M19 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.77□□□□□ -0.21
LINC00477Q96M19 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LINC00477Q96M19 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 FZD10-202ENST00000539839 3282 ntBASIC13.76□□□□□ -0.21
LINC00477Q96M19 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 MFAP1P1-201ENST00000442257 1255 ntBASIC13.76□□□□□ -0.21
LINC00477Q96M19 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AC116562.2-201ENST00000507042 360 ntBASIC13.76□□□□□ -0.21
LINC00477Q96M19 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.76□□□□□ -0.21
LINC00477Q96M19 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 ESPNP-201ENST00000270691 2015 ntBASIC13.76□□□□□ -0.21
LINC00477Q96M19 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 GNAS-203ENST00000306120 1878 ntBASIC13.76□□□□□ -0.21
LINC00477Q96M19 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC13.76□□□□□ -0.21
LINC00477Q96M19 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LINC00477Q96M19 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.75□□□□□ -0.21
LINC00477Q96M19 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms