Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC4Q92889 GPAT2P1-201ENST00000444924 1672 ntBASIC20.83■□□□□ 0.92
ERCC4Q92889 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.83■□□□□ 0.92
ERCC4Q92889 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC4Q92889 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.83■□□□□ 0.92
ERCC4Q92889 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC4Q92889 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC4Q92889 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
ERCC4Q92889 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.82■□□□□ 0.92
ERCC4Q92889 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.82■□□□□ 0.92
ERCC4Q92889 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
ERCC4Q92889 ABHD17AP1-201ENST00000358206 933 ntBASIC20.82■□□□□ 0.92
ERCC4Q92889 TSPY20P-201ENST00000450910 630 ntBASIC20.82■□□□□ 0.92
ERCC4Q92889 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC4Q92889 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC4Q92889 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
ERCC4Q92889 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC4Q92889 FAM197Y4-202ENST00000622692 608 ntBASIC20.82■□□□□ 0.92
ERCC4Q92889 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
ERCC4Q92889 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
ERCC4Q92889 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC4Q92889 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC4Q92889 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
ERCC4Q92889 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
ERCC4Q92889 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.81■□□□□ 0.92
ERCC4Q92889 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC4Q92889 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
ERCC4Q92889 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC4Q92889 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
ERCC4Q92889 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.81■□□□□ 0.92
ERCC4Q92889 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.81■□□□□ 0.92
ERCC4Q92889 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.81■□□□□ 0.92
ERCC4Q92889 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.81■□□□□ 0.92
ERCC4Q92889 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
ERCC4Q92889 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.81■□□□□ 0.92
ERCC4Q92889 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC4Q92889 AL109659.2-201ENST00000606809 1674 ntBASIC20.8■□□□□ 0.92
ERCC4Q92889 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.8■□□□□ 0.92
ERCC4Q92889 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 AL023284.2-201ENST00000405850 579 ntBASIC20.8■□□□□ 0.92
ERCC4Q92889 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.8■□□□□ 0.92
ERCC4Q92889 AP000692.2-201ENST00000608391 879 ntBASIC20.8■□□□□ 0.92
ERCC4Q92889 MYC-208ENST00000641036 567 ntBASIC20.8■□□□□ 0.92
ERCC4Q92889 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
ERCC4Q92889 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
ERCC4Q92889 AC138028.4-201ENST00000564984 1845 ntBASIC20.8■□□□□ 0.92
ERCC4Q92889 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.8■□□□□ 0.92
ERCC4Q92889 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ERCC4Q92889 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
ERCC4Q92889 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.79■□□□□ 0.92
ERCC4Q92889 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.79■□□□□ 0.92
ERCC4Q92889 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.79■□□□□ 0.92
ERCC4Q92889 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
ERCC4Q92889 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms