Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 AC211486.1-202ENST00000416371 468 ntBASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 AC023274.1-201ENST00000418278 595 ntBASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 AC211476.1-201ENST00000503899 468 ntBASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC88AQ3V6T2 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 MED16-201ENST00000269814 1199 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 AC009533.2-201ENST00000543664 586 ntBASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 AC002347.1-201ENST00000569543 541 ntBASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 AC005332.7-201ENST00000614046 2005 ntBASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC88AQ3V6T2 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 CYGB-205ENST00000590175 830 ntTSL 3 BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 INTS4P1-201ENST00000438455 1935 ntBASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC88AQ3V6T2 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 INIP-202ENST00000374236 874 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 IMP4-203ENST00000409935 958 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 ABCD1P5-201ENST00000445663 754 ntBASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 MIR3687-2-201ENST00000577708 61 ntBASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 MIR3687-1-201ENST00000614492 61 ntBASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC88AQ3V6T2 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 RCN1P2-201ENST00000398357 915 ntBASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 COA5-202ENST00000409997 557 ntTSL 4 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC88AQ3V6T2 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms