Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTCFP49711 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTCFP49711 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTCFP49711 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC21.19■□□□□ 0.98
CTCFP49711 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTCFP49711 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC21.19■□□□□ 0.98
CTCFP49711 KRT18P2-201ENST00000447938 1258 ntBASIC21.19■□□□□ 0.98
CTCFP49711 CEND1P1-201ENST00000451006 455 ntBASIC21.19■□□□□ 0.98
CTCFP49711 AL513190.1-201ENST00000621254 727 ntBASIC21.19■□□□□ 0.98
CTCFP49711 AC112777.1-201ENST00000540175 1423 ntBASIC21.19■□□□□ 0.98
CTCFP49711 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CTCFP49711 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
CTCFP49711 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CTCFP49711 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 AC020907.5-201ENST00000624372 1936 ntBASIC21.18■□□□□ 0.98
CTCFP49711 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.18■□□□□ 0.98
CTCFP49711 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.18■□□□□ 0.98
CTCFP49711 ABCD1P5-201ENST00000445663 754 ntBASIC21.18■□□□□ 0.98
CTCFP49711 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.18■□□□□ 0.98
CTCFP49711 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.18■□□□□ 0.98
CTCFP49711 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.18■□□□□ 0.98
CTCFP49711 AC004449.1-201ENST00000564240 433 ntBASIC21.18■□□□□ 0.98
CTCFP49711 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 AL139288.1-201ENST00000623748 933 ntBASIC21.18■□□□□ 0.98
CTCFP49711 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.18■□□□□ 0.98
CTCFP49711 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTCFP49711 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.18■□□□□ 0.98
CTCFP49711 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CTCFP49711 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.18■□□□□ 0.98
CTCFP49711 INTS4P1-201ENST00000438455 1935 ntBASIC21.17■□□□□ 0.98
CTCFP49711 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CTCFP49711 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.17■□□□□ 0.98
CTCFP49711 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.17■□□□□ 0.98
CTCFP49711 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.17■□□□□ 0.98
CTCFP49711 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.17■□□□□ 0.98
CTCFP49711 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.17■□□□□ 0.98
CTCFP49711 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.17■□□□□ 0.98
CTCFP49711 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21.17■□□□□ 0.98
CTCFP49711 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC21.17■□□□□ 0.98
CTCFP49711 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.17■□□□□ 0.98
CTCFP49711 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.17■□□□□ 0.98
CTCFP49711 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CTCFP49711 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CTCFP49711 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.17■□□□□ 0.98
CTCFP49711 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTCFP49711 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CTCFP49711 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CTCFP49711 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.16■□□□□ 0.98
CTCFP49711 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.16■□□□□ 0.98
CTCFP49711 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
CTCFP49711 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.16■□□□□ 0.98
CTCFP49711 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTCFP49711 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
CTCFP49711 GAPDHP21-201ENST00000450301 1010 ntBASIC21.16■□□□□ 0.98
CTCFP49711 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CTCFP49711 CCND1-203ENST00000536559 553 ntTSL 3 BASIC21.16■□□□□ 0.98
CTCFP49711 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.16■□□□□ 0.98
CTCFP49711 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC21.16■□□□□ 0.98
CTCFP49711 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.16■□□□□ 0.98
CTCFP49711 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.16■□□□□ 0.98
CTCFP49711 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
CTCFP49711 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms