Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH4O15457 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 AIRN-201ENST00000601203 4374 ntBASIC20.57■□□□□ 0.88
MSH4O15457 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
MSH4O15457 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH4O15457 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH4O15457 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.57■□□□□ 0.88
MSH4O15457 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
MSH4O15457 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH4O15457 AC113404.2-201ENST00000507884 177 ntBASIC20.57■□□□□ 0.88
MSH4O15457 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.57■□□□□ 0.88
MSH4O15457 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH4O15457 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 AC009113.1-201ENST00000570267 2443 ntBASIC20.57■□□□□ 0.88
MSH4O15457 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH4O15457 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
MSH4O15457 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH4O15457 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
MSH4O15457 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 BX276092.5-203ENST00000456199 560 ntBASIC20.56■□□□□ 0.88
MSH4O15457 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.56■□□□□ 0.88
MSH4O15457 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH4O15457 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.56■□□□□ 0.88
MSH4O15457 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
MSH4O15457 AL121672.3-201ENST00000608644 468 ntBASIC20.56■□□□□ 0.88
MSH4O15457 AC093458.2-201ENST00000623150 629 ntBASIC20.56■□□□□ 0.88
MSH4O15457 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH4O15457 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH4O15457 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 AL353692.3-201ENST00000407031 1396 ntBASIC20.56■□□□□ 0.88
MSH4O15457 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH4O15457 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
MSH4O15457 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.55■□□□□ 0.88
MSH4O15457 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH4O15457 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
MSH4O15457 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
MSH4O15457 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH4O15457 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.55■□□□□ 0.88
MSH4O15457 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.55■□□□□ 0.88
MSH4O15457 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.55■□□□□ 0.88
MSH4O15457 AC090164.3-201ENST00000610780 2143 ntBASIC20.55■□□□□ 0.88
MSH4O15457 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
MSH4O15457 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH4O15457 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.55■□□□□ 0.88
MSH4O15457 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH4O15457 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
MSH4O15457 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
MSH4O15457 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.54■□□□□ 0.88
MSH4O15457 AP002383.4-201ENST00000442518 975 ntBASIC20.54■□□□□ 0.88
MSH4O15457 TSSC2-201ENST00000450217 709 ntBASIC20.54■□□□□ 0.88
MSH4O15457 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.54■□□□□ 0.88
MSH4O15457 AC008687.5-201ENST00000593746 558 ntBASIC20.54■□□□□ 0.88
MSH4O15457 NPAP1P7-201ENST00000613027 823 ntBASIC20.54■□□□□ 0.88
MSH4O15457 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.54■□□□□ 0.88
MSH4O15457 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.54■□□□□ 0.88
MSH4O15457 AL020996.1-203ENST00000536896 2307 ntBASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms