Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP1O15259 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
NPHP1O15259 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.28
NPHP1O15259 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP1O15259 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP1O15259 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
NPHP1O15259 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP1O15259 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
NPHP1O15259 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 KRT89P-201ENST00000620027 1478 ntBASIC23.07■■□□□ 1.28
NPHP1O15259 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
NPHP1O15259 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 TLE1-202ENST00000376484 666 ntTSL 3 BASIC23.07■■□□□ 1.28
NPHP1O15259 RPP21-221ENST00000428040 594 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP1O15259 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.07■■□□□ 1.28
NPHP1O15259 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC23.07■■□□□ 1.28
NPHP1O15259 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC23.07■■□□□ 1.28
NPHP1O15259 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP1O15259 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
NPHP1O15259 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC23.07■■□□□ 1.28
NPHP1O15259 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
NPHP1O15259 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.06■■□□□ 1.28
NPHP1O15259 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 MCC-208ENST00000514701 2855 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
NPHP1O15259 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 THAP5-204ENST00000438865 868 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC23.06■■□□□ 1.28
NPHP1O15259 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.06■■□□□ 1.28
NPHP1O15259 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC23.06■■□□□ 1.28
NPHP1O15259 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC23.06■■□□□ 1.28
NPHP1O15259 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
NPHP1O15259 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
NPHP1O15259 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.06■■□□□ 1.28
NPHP1O15259 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.06■■□□□ 1.28
NPHP1O15259 AC120498.9-201ENST00000339021 3867 ntBASIC23.06■■□□□ 1.28
NPHP1O15259 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
NPHP1O15259 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
NPHP1O15259 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP1O15259 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP1O15259 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC23.05■■□□□ 1.28
NPHP1O15259 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP1O15259 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP1O15259 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC23.05■■□□□ 1.28
NPHP1O15259 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC23.05■■□□□ 1.28
NPHP1O15259 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC23.05■■□□□ 1.28
NPHP1O15259 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 AC068587.9-201ENST00000641814 219 ntBASIC23.05■■□□□ 1.28
NPHP1O15259 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP1O15259 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.05■■□□□ 1.28
NPHP1O15259 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
NPHP1O15259 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC23.05■■□□□ 1.28
NPHP1O15259 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP1O15259 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC23.05■■□□□ 1.28
NPHP1O15259 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
NPHP1O15259 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
NPHP1O15259 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.05■■□□□ 1.28
NPHP1O15259 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP1O15259 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP1O15259 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC23.04■■□□□ 1.28
NPHP1O15259 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
NPHP1O15259 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms