Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HMGN4O00479 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGN4O00479 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGN4O00479 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HMGN4O00479 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGN4O00479 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGN4O00479 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGN4O00479 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGN4O00479 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGN4O00479 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGN4O00479 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.08■□□□□ 0.32
HMGN4O00479 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.08■□□□□ 0.32
HMGN4O00479 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.08■□□□□ 0.32
HMGN4O00479 AC112497.1-201ENST00000624824 639 ntBASIC17.08■□□□□ 0.32
HMGN4O00479 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGN4O00479 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HMGN4O00479 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGN4O00479 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGN4O00479 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGN4O00479 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HMGN4O00479 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.08■□□□□ 0.32
HMGN4O00479 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGN4O00479 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 AC134043.2-201ENST00000624206 2238 ntBASIC17.07■□□□□ 0.32
HMGN4O00479 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HMGN4O00479 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 INGX-201ENST00000359239 846 ntBASIC17.07■□□□□ 0.32
HMGN4O00479 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGN4O00479 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGN4O00479 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.07■□□□□ 0.32
HMGN4O00479 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 TSPY15P-201ENST00000457163 923 ntBASIC17.07■□□□□ 0.32
HMGN4O00479 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 AC104390.1-201ENST00000555663 520 ntBASIC17.07■□□□□ 0.32
HMGN4O00479 MIR4497-201ENST00000583208 89 ntBASIC17.07■□□□□ 0.32
HMGN4O00479 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HMGN4O00479 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HMGN4O00479 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
HMGN4O00479 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HMGN4O00479 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.07■□□□□ 0.32
HMGN4O00479 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGN4O00479 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGN4O00479 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGN4O00479 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGN4O00479 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGN4O00479 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HMGN4O00479 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGN4O00479 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGN4O00479 EGLN1P1-201ENST00000531623 762 ntBASIC17.06■□□□□ 0.32
HMGN4O00479 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.06■□□□□ 0.32
HMGN4O00479 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGN4O00479 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGN4O00479 AP000997.3-201ENST00000623333 2250 ntBASIC17.06■□□□□ 0.32
HMGN4O00479 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGN4O00479 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms