Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 AL353135.1-201ENST00000606729 504 ntBASIC14.16□□□□□ -0.14
COL6A5A8TX70 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 AC006504.4-201ENST00000592118 1568 ntBASIC14.16□□□□□ -0.14
COL6A5A8TX70 SIGLEC16-201ENST00000599858 1437 ntBASIC14.15□□□□□ -0.14
COL6A5A8TX70 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 ATP5G2P4-201ENST00000442175 420 ntBASIC14.15□□□□□ -0.14
COL6A5A8TX70 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 AL357033.4-201ENST00000617703 1807 ntBASIC14.15□□□□□ -0.14
COL6A5A8TX70 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A5A8TX70 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL6A5A8TX70 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 AC004945.1-201ENST00000416738 983 ntBASIC14.14□□□□□ -0.15
COL6A5A8TX70 PRYP5-201ENST00000451909 266 ntBASIC14.14□□□□□ -0.15
COL6A5A8TX70 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 AC068472.1-201ENST00000474589 881 ntBASIC14.14□□□□□ -0.15
COL6A5A8TX70 KRT19P2-202ENST00000557173 1012 ntBASIC14.14□□□□□ -0.15
COL6A5A8TX70 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 SNX12-206ENST00000622259 661 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 DET1-207ENST00000564406 2315 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 ME2-216ENST00000639850 2331 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 EP400NL-214ENST00000641289 2402 ntBASIC14.14□□□□□ -0.15
COL6A5A8TX70 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 PMPCAP1-201ENST00000508114 1576 ntBASIC14.14□□□□□ -0.15
COL6A5A8TX70 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A5A8TX70 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A5A8TX70 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A5A8TX70 CRYGEP-201ENST00000412192 528 ntBASIC14.13□□□□□ -0.15
COL6A5A8TX70 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.13□□□□□ -0.15
COL6A5A8TX70 AL596325.1-201ENST00000563991 1082 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms