Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 AL096828.2-201ENST00000567259 1965 ntBASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC28BQ9BUN5 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.89■□□□□ 0.46
CCDC28BQ9BUN5 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC28BQ9BUN5 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 MST1L-201ENST00000442552 2185 ntBASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 GMCL1P1-201ENST00000463439 1581 ntBASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 MTDHP1-201ENST00000605323 784 ntBASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 AC133041.1-202ENST00000642053 222 ntBASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 AL109659.2-201ENST00000606809 1674 ntBASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC28BQ9BUN5 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 AL645608.8-201ENST00000606034 2086 ntBASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 AC004980.1-204ENST00000429707 299 ntBASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 KRT16P5-201ENST00000455284 522 ntBASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 UNC93B5-201ENST00000530315 699 ntBASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 AD000864.1-201ENST00000624076 2295 ntBASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CCDC28BQ9BUN5 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms