Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TTC28Q96AY4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TTC28Q96AY4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TTC28Q96AY4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TTC28Q96AY4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 COX5BP8-201ENST00000416911 349 ntBASIC18.57■□□□□ 0.56
TTC28Q96AY4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 AC113404.2-201ENST00000507884 177 ntBASIC18.57■□□□□ 0.56
TTC28Q96AY4 HILS1-202ENST00000545329 423 ntBASIC18.57■□□□□ 0.56
TTC28Q96AY4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TTC28Q96AY4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.57■□□□□ 0.56
TTC28Q96AY4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TTC28Q96AY4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TTC28Q96AY4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TTC28Q96AY4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 SPDYE22P-201ENST00000582158 798 ntBASIC18.56■□□□□ 0.56
TTC28Q96AY4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
TTC28Q96AY4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TTC28Q96AY4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
TTC28Q96AY4 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.56■□□□□ 0.56
TTC28Q96AY4 RN7SL692P-201ENST00000464677 288 ntBASIC18.56■□□□□ 0.56
TTC28Q96AY4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 CRYGEP-201ENST00000412192 528 ntBASIC18.55■□□□□ 0.56
TTC28Q96AY4 RPS2P32-201ENST00000439199 892 ntBASIC18.55■□□□□ 0.56
TTC28Q96AY4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 AC006504.4-201ENST00000592118 1568 ntBASIC18.55■□□□□ 0.56
TTC28Q96AY4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 RCC2P3-201ENST00000418112 1537 ntBASIC18.55■□□□□ 0.56
TTC28Q96AY4 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TTC28Q96AY4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.55■□□□□ 0.56
TTC28Q96AY4 AL662799.1-202ENST00000614205 422 ntBASIC18.55■□□□□ 0.56
TTC28Q96AY4 AL121761.2-201ENST00000598007 1648 ntBASIC18.54■□□□□ 0.56
TTC28Q96AY4 FBXW4P1-201ENST00000426721 2239 ntBASIC18.54■□□□□ 0.56
TTC28Q96AY4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TTC28Q96AY4 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 MIR1909-201ENST00000411312 80 ntBASIC18.54■□□□□ 0.56
TTC28Q96AY4 AL627223.1-201ENST00000416693 442 ntBASIC18.54■□□□□ 0.56
TTC28Q96AY4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TTC28Q96AY4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 AL022326.1-202ENST00000641533 845 ntBASIC18.54■□□□□ 0.56
TTC28Q96AY4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TTC28Q96AY4 SIGLEC16-201ENST00000599858 1437 ntBASIC18.54■□□□□ 0.56
TTC28Q96AY4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TTC28Q96AY4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TTC28Q96AY4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TTC28Q96AY4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.54■□□□□ 0.56
TTC28Q96AY4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TTC28Q96AY4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
TTC28Q96AY4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 U91328.1-201ENST00000437528 223 ntBASIC18.53■□□□□ 0.56
TTC28Q96AY4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.53■□□□□ 0.56
TTC28Q96AY4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 AC009237.14-201ENST00000609975 1594 ntBASIC18.53■□□□□ 0.56
TTC28Q96AY4 AL391422.3-201ENST00000603791 2761 ntBASIC18.53■□□□□ 0.56
TTC28Q96AY4 GUSBP5-202ENST00000510805 1989 ntBASIC18.53■□□□□ 0.56
TTC28Q96AY4 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TTC28Q96AY4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TTC28Q96AY4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.52■□□□□ 0.56
TTC28Q96AY4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TTC28Q96AY4 AC091812.2-201ENST00000619081 385 ntBASIC18.52■□□□□ 0.56
TTC28Q96AY4 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms