Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PDLIM3Q53GG5 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC15.27■□□□□ 0.04
PDLIM3Q53GG5 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 CYP2D8P-201ENST00000433633 1490 ntBASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.27■□□□□ 0.03
PDLIM3Q53GG5 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 HTR7P1-201ENST00000538670 1336 ntBASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 AC010947.1-201ENST00000623454 693 ntBASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 AC073592.3-201ENST00000625118 1834 ntBASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PDLIM3Q53GG5 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.25■□□□□ 0.03
PDLIM3Q53GG5 AC022616.7-201ENST00000525383 220 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms