Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC1P18827 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC1P18827 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC1P18827 FLJ13224-201ENST00000313737 1514 ntBASIC17.52■□□□□ 0.4
SDC1P18827 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC1P18827 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.52■□□□□ 0.4
SDC1P18827 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC1P18827 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SDC1P18827 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SDC1P18827 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SDC1P18827 MIR149-201ENST00000384879 89 ntBASIC17.52■□□□□ 0.4
SDC1P18827 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.52■□□□□ 0.4
SDC1P18827 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC1P18827 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
SDC1P18827 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SDC1P18827 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC1P18827 AL390955.1-201ENST00000428694 934 ntBASIC17.52■□□□□ 0.4
SDC1P18827 KRT18P23-201ENST00000435622 1283 ntBASIC17.52■□□□□ 0.4
SDC1P18827 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SDC1P18827 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.52■□□□□ 0.4
SDC1P18827 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC1P18827 FITM1-202ENST00000559294 800 ntBASIC17.52■□□□□ 0.4
SDC1P18827 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.52■□□□□ 0.4
SDC1P18827 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.52■□□□□ 0.4
SDC1P18827 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.52■□□□□ 0.4
SDC1P18827 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.52■□□□□ 0.4
SDC1P18827 AC092338.2-201ENST00000568827 1415 ntBASIC17.52■□□□□ 0.4
SDC1P18827 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC1P18827 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
SDC1P18827 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.52■□□□□ 0.39
SDC1P18827 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC1P18827 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC1P18827 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC1P18827 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SDC1P18827 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
SDC1P18827 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC1P18827 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.52■□□□□ 0.39
SDC1P18827 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.51■□□□□ 0.39
SDC1P18827 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
SDC1P18827 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.51■□□□□ 0.39
SDC1P18827 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 WWOX-216ENST00000569818 525 ntBASIC17.51■□□□□ 0.39
SDC1P18827 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SDC1P18827 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SDC1P18827 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.51■□□□□ 0.39
SDC1P18827 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC1P18827 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.51■□□□□ 0.39
SDC1P18827 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.5■□□□□ 0.39
SDC1P18827 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 KRT8P7-201ENST00000533003 1432 ntBASIC17.5■□□□□ 0.39
SDC1P18827 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 AC134043.2-201ENST00000624206 2238 ntBASIC17.5■□□□□ 0.39
SDC1P18827 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.5■□□□□ 0.39
SDC1P18827 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 SLC25A6P5-201ENST00000435663 894 ntBASIC17.5■□□□□ 0.39
SDC1P18827 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SDC1P18827 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.5■□□□□ 0.39
SDC1P18827 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SDC1P18827 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.5■□□□□ 0.39
SDC1P18827 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC1P18827 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms