Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HIF3AQ9Y2N7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 AC018470.1-201ENST00000624790 3129 ntBASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 ESPNP-201ENST00000270691 2015 ntBASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.63■□□□□ 0.25
HIF3AQ9Y2N7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 TSPY17P-201ENST00000450329 467 ntBASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 AL353719.1-201ENST00000566847 864 ntBASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 AC036111.1-201ENST00000533973 1582 ntBASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 HOXB1-202ENST00000577092 1414 ntBASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HIF3AQ9Y2N7 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms